Zobrazeno 1 - 10
of 12
pro vyhledávání: '"Rika Anderson"'
Publikováno v:
Microbiome, Vol 6, Iss 1, Pp 1-15 (2018)
Abstract Background The microbial endosymbionts of two species of vestimentiferan tubeworms (Escarpia sp. and Lamellibrachia sp.2) collected from an area of low-temperature hydrothermal diffuse vent flow at the Mid-Cayman Rise (MCR) in the Caribbean
Externí odkaz:
https://doaj.org/article/bf754fcd0d8146a4a111a66313654b94
Microbial Populations Are Shaped by Dispersal and Recombination in a Low Biomass Subseafloor Habitat
Publikováno v:
mBio. 13
The subseafloor is a vast habitat that supports microorganisms that have a global scale impact on geochemical cycles. Many of the endemic microbial communities inhabiting the subseafloor consist of small populations under growth-limited conditions. F
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ae2ba242dd361c54ddeba26375222b2d
https://doi.org/10.1128/mbio.00354-22
https://doi.org/10.1128/mbio.00354-22
Autor:
Kristopher Kieft, Zhichao Zhou, Rika Anderson, Alison Buchan, Barbara Campbell, Steven Hallam, Matthias Hess, Matthew Sullivan, David Walsh, Simon Roux, Karthik Anantharaman
Microbial sulfur metabolism contributes to biogeochemical cycling on global scales. Sulfur metabolizing microbes are infected by phages that can encode auxiliary metabolic genes (AMGs) to alter sulfur metabolism within host cells but remain poorly ch
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d6758107c52a9f8ccab348fd7f70f08a
https://doi.org/10.21203/rs.3.rs-68034/v1
https://doi.org/10.21203/rs.3.rs-68034/v1
Autor:
Rika Anderson
This week we’re going to take a tour of the server, which will be our home base for the next several weeks. There are important things to know about how to navigate the server, how to use it politely, and how to look at files. We’re mostly going
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::9444635448563aae4e0808898290dfc2
https://doi.org/10.17504/protocols.io.jjickke
https://doi.org/10.17504/protocols.io.jjickke
Autor:
Rika Anderson
This week we're going to take a closer look at the taxonomy of your datasets using mothur. We'll classify taxonomy and diversity using the metagenomic reads that mapped to 16S ribosomal RNA. The Tara Oceans folks have already pulled out the reads tha
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::80f077418438cf462b26cca7a75eb6d0
https://doi.org/10.17504/protocols.io.g7tbznn
https://doi.org/10.17504/protocols.io.g7tbznn
Autor:
Rika Anderson
Now that we've learned how to assemble our sequences, we'll next learn how to identify genes (or open reading frames) on our new assemblies. We'll do that using a software program called Prodigal. After we've identified ORFs, we will compare those OR
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3f8d7561c8fe2e17bf96acab4032a5a3
https://doi.org/10.17504/protocols.io.gz3bx8n
https://doi.org/10.17504/protocols.io.gz3bx8n