Zobrazeno 1 - 10
of 25
pro vyhledávání: '"Riesenfeld SJ"'
Autor:
Ahituv, Nadav, Pollard, Katherine, Smith, RP, Riesenfeld, SJ, Holloway, AK, Li, Q, Murphy, KK, Feliciano, NM, Orecchia, L, Oksenberg, N, Pollard, KS
Publikováno v:
Ahituv, Nadav; Pollard, Katherine; Smith, RP; Riesenfeld, SJ; Holloway, AK; Li, Q; et al.(2013). A compact, in vivo screen of all 6-mers reveals drivers of tissue-specific expression and guides synthetic regulatory element design. UC San Francisco: Retrieved from: http://www.escholarship.org/uc/item/4rx601p6
Background: Large-scale annotation efforts have improved our ability to coarsely predict regulatory elements throughout vertebrate genomes. However, it is unclear how complex spatiotemporal patterns of gene expression driven by these elements emerge
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______325::dfa90cdbc4759dcb982b9ef11da4c072
http://www.escholarship.org/uc/item/4rx601p6
http://www.escholarship.org/uc/item/4rx601p6
Publikováno v:
Pollard, Katherine; Riesenfeld, SJ; & Pollard, KS. (2013). Beyond classification: Gene-family phylogenies from shotgun metagenomic reads enable accurate community analysis. UC San Francisco: Retrieved from: http://www.escholarship.org/uc/item/70g4074b
Background: Sequence-based phylogenetic trees are a well-established tool for characterizing diversity of both macroorganisms and microorganisms. Phylogenetic methods have recently been applied to shotgun metagenomic data from microbial communities,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______325::acef76462973ea6b3cf85683548926f0
http://www.escholarship.org/uc/item/70g4074b
http://www.escholarship.org/uc/item/70g4074b
Autor:
Sangani KA, Parker ME, Anderson HD, Chen L, Pandey SP, Pierre JF, Meisel M, Riesenfeld SJ, Hinterleitner R, Jabri B
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2024 Aug 30. Date of Electronic Publication: 2024 Aug 30.
Autor:
Liang Z; Committee on Immunology, University of Chicago, Chicago, IL, USA.; Department of Pathology, University of Chicago, Chicago, IL, USA., Anderson HD; Biophysical Sciences Graduate Program, University of Chicago, Chicago, IL, USA., Locher V; Committee on Immunology, University of Chicago, Chicago, IL, USA., O'Leary C; Department of Pathology, University of Chicago, Chicago, IL, USA., Riesenfeld SJ; Committee on Immunology, University of Chicago, Chicago, IL, USA.; Pritzker School of Molecular Engineering, University of Chicago, Chicago, IL, USA.; Department of Medicine, University of Chicago, Chicago, IL, USA.; Institute for Biophysical Dynamics, University of Chicago, Chicago, IL, USA., Jabri B; Committee on Immunology, University of Chicago, Chicago, IL, USA.; Department of Medicine, University of Chicago, Chicago, IL, USA., McDonald BD; Department of Medicine, University of Chicago, Chicago, IL, USA. benjamin.mcdonald@uchicagomedicine.org., Bendelac A; Committee on Immunology, University of Chicago, Chicago, IL, USA.; Department of Pathology, University of Chicago, Chicago, IL, USA.
Publikováno v:
Nature immunology [Nat Immunol] 2024 Jul; Vol. 25 (7), pp. 1172-1182. Date of Electronic Publication: 2024 Jun 13.
Autor:
van Elsas MJ; Department of Medical Oncology, Oncode Institute, Leiden University Medical Center, Leiden 2333ZA, the Netherlands., Middelburg J; Department of Medical Oncology, Oncode Institute, Leiden University Medical Center, Leiden 2333ZA, the Netherlands., Labrie C; Department of Medical Oncology, Oncode Institute, Leiden University Medical Center, Leiden 2333ZA, the Netherlands., Roelands J; Department of Pathology, Leiden University Medical Center, Leiden 2333ZA, the Netherlands., Schaap G; Department of Medical Oncology, Oncode Institute, Leiden University Medical Center, Leiden 2333ZA, the Netherlands., Sluijter M; Department of Medical Oncology, Oncode Institute, Leiden University Medical Center, Leiden 2333ZA, the Netherlands., Tonea R; Department of Pathology, University of Chicago, Chicago, IL 60637, USA; Pritzker School of Molecular Engineering, Chicago, IL 60637, USA., Ovcinnikovs V; Genmab, Utrecht 3584CT, the Netherlands., Lloyd K; Genmab, Utrecht 3584CT, the Netherlands., Schuurman J; Genmab, Utrecht 3584CT, the Netherlands., Riesenfeld SJ; Pritzker School of Molecular Engineering, Chicago, IL 60637, USA., Gajewski TF; Department of Pathology, University of Chicago, Chicago, IL 60637, USA., de Miranda NFCC; Department of Pathology, Leiden University Medical Center, Leiden 2333ZA, the Netherlands., van Hall T; Department of Medical Oncology, Oncode Institute, Leiden University Medical Center, Leiden 2333ZA, the Netherlands., van der Burg SH; Department of Medical Oncology, Oncode Institute, Leiden University Medical Center, Leiden 2333ZA, the Netherlands. Electronic address: shvdburg@lumc.nl.
Publikováno v:
Cancer cell [Cancer Cell] 2024 Jun 10; Vol. 42 (6), pp. 1032-1050.e10. Date of Electronic Publication: 2024 May 16.
Autor:
Ramesh S; Pritzker School of Medicine, University of Chicago, Chicago, IL, USA., Tomesh T; Infleqtion, Chicago, IL, USA., Riesenfeld SJ; Pritzker School of Molecular Engineering, Univeristy of Chicago, Chicago, IL, USA.; Department of Medicine, University of Chicago, Chicago, IL, USA.; Committee on Immunology, University of Chicago, Chicago, IL, USA., Chong FT; Infleqtion, Chicago, IL, USA. frederic.chong@infleqtion.com.; Department of Computer Science, University of Chicago, Chicago, IL, USA. frederic.chong@infleqtion.com., Pearson AT; Department of Medicine, University of Chicago, Chicago, IL, USA. apearson5@medicine.bsd.uchicago.edu.
Publikováno v:
Nature cancer [Nat Cancer] 2024 Jun; Vol. 5 (6), pp. 811-816.
Autor:
Gao CF; Department of Chemistry, University of Chicago, Chicago, IL 60637., Vaikuntanathan S; Department of Chemistry, University of Chicago, Chicago, IL 60637.; Institute for Biophysical Dynamics, University of Chicago, Chicago, IL 60637., Riesenfeld SJ; Institute for Biophysical Dynamics, University of Chicago, Chicago, IL 60637.; Pritzker School of Molecular Engineering, University of Chicago, Chicago, IL 60637.; Department of Medicine, University of Chicago, Chicago, IL 60637.; Committee on Immunology, Biological Sciences Division, University of Chicago, Chicago, IL 60637.
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2024 Apr 30; Vol. 121 (18), pp. e2306901121. Date of Electronic Publication: 2024 Apr 26.
Autor:
Gao CF; Department of Chemistry, University of Chicago, IL., Vaikuntanathan S; Department of Chemistry, University of Chicago, IL.; Institute for Biophysical Dynamics, University of Chicago, IL., Riesenfeld SJ; Institute for Biophysical Dynamics, University of Chicago, IL.; Pritzker School of Molecular Engineering, University of Chicago, IL.; Department of Medicine, University of Chicago, IL.; Committee on Immunology, University of Chicago, IL.
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2023 Jun 13. Date of Electronic Publication: 2023 Jun 13.
Autor:
Earley ZM; Committee on Immunology, University of Chicago, Chicago, IL, USA; Department of Medicine, University of Chicago, Chicago, IL, USA., Lisicka W; Committee on Immunology, University of Chicago, Chicago, IL, USA; Department of Medicine, University of Chicago, Chicago, IL, USA., Sifakis JJ; Department of Chemistry, University of Chicago, Chicago, IL, USA., Aguirre-Gamboa R; Department of Medicine, University of Chicago, Chicago, IL, USA., Kowalczyk A; Department of Medicine, University of Chicago, Chicago, IL, USA., Barlow JT; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA., Shaw DG; Committee on Immunology, University of Chicago, Chicago, IL, USA; Department of Medicine, University of Chicago, Chicago, IL, USA., Discepolo V; Department of Medical Translational Sciences and European Laboratory for the Investigation of Food Induced Diseases, University of Federico II, Naples, Italy., Tan IL; Department of Gastroenterology and Hepatology, University of Groningen and University of Medical Center Groningen, Groningen, the Netherlands., Gona S; Genetics, Genomics, and Systems Biology, University of Chicago, Chicago, IL, USA., Ernest JD; Department of Medicine, University of Chicago, Chicago, IL, USA., Matzinger P; Ghost Lab, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA., Barreiro LB; Committee on Immunology, University of Chicago, Chicago, IL, USA; Department of Medicine, University of Chicago, Chicago, IL, USA; Genetics, Genomics, and Systems Biology, University of Chicago, Chicago, IL, USA., Morgun A; College of Pharmacy, Oregon State University, Corvallis, OR, USA., Bendelac A; Committee on Immunology, University of Chicago, Chicago, IL, USA; Department of Pathology, University of Chicago, Chicago, IL, USA., Ismagilov RF; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA; Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, USA., Shulzhenko N; Department of Biomedical Sciences, Oregon State University, Corvallis, OR, USA., Riesenfeld SJ; Committee on Immunology, University of Chicago, Chicago, IL, USA; Department of Medicine, University of Chicago, Chicago, IL, USA; Pritzker School of Molecular Engineering, University of Chicago, Chicago, IL, USA; Institute for Biophysical Dynamics, University of Chicago, Chicago, IL, USA. Electronic address: sriesenfeld@uchicago.edu., Jabri B; Committee on Immunology, University of Chicago, Chicago, IL, USA; Department of Medicine, University of Chicago, Chicago, IL, USA; Department of Pathology, University of Chicago, Chicago, IL, USA; Department of Pediatrics, University of Chicago, Chicago, IL, USA. Electronic address: bjabri@bsd.uchicago.edu.
Publikováno v:
Immunity [Immunity] 2023 Jan 10; Vol. 56 (1), pp. 43-57.e10.
Autor:
Yang D; Department of Immunology, Harvard Medical School, Boston, MA 02115, USA., Jacobson A; Department of Immunology, Harvard Medical School, Boston, MA 02115, USA., Meerschaert KA; Department of Immunology, Harvard Medical School, Boston, MA 02115, USA., Sifakis JJ; Department of Chemistry, University of Chicago, Chicago, IL 60637, USA., Wu M; Department of Immunology, Harvard Medical School, Boston, MA 02115, USA., Chen X; Division of Gastroenterology, Hepatology and Nutrition, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA., Yang T; Department of Immunology, Harvard Medical School, Boston, MA 02115, USA., Zhou Y; Department of Immunology, Harvard Medical School, Boston, MA 02115, USA., Anekal PV; MicRoN Core, Harvard Medical School, Boston, MA 02115, USA., Rucker RA; Department of Immunology, Harvard Medical School, Boston, MA 02115, USA., Sharma D; Department of Medicine, University of Chicago, Chicago, IL 60637, USA., Sontheimer-Phelps A; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA., Wu GS; Department of Immunology, Harvard Medical School, Boston, MA 02115, USA., Deng L; Department of Immunology, Harvard Medical School, Boston, MA 02115, USA., Anderson MD; Division of Gastroenterology, Hepatology and Nutrition, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA., Choi S; Department of Immunology, Harvard Medical School, Boston, MA 02115, USA., Neel D; Department of Immunology, Harvard Medical School, Boston, MA 02115, USA., Lee N; Department of Immunology, Harvard Medical School, Boston, MA 02115, USA., Kasper DL; Department of Immunology, Harvard Medical School, Boston, MA 02115, USA., Jabri B; Department of Medicine, University of Chicago, Chicago, IL 60637, USA; Committee on Immunology, University of Chicago, Chicago, IL 60637, USA; Department of Pathology and Pediatrics, University of Chicago, Chicago, IL 60637, USA., Huh JR; Department of Immunology, Harvard Medical School, Boston, MA 02115, USA., Johansson M; Department of Medical Biochemistry, Institute of Biomedicine, University of Gothenburg, Gothenburg 40530, Sweden., Thiagarajah JR; Division of Gastroenterology, Hepatology and Nutrition, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA., Riesenfeld SJ; Department of Medicine, University of Chicago, Chicago, IL 60637, USA; Committee on Immunology, University of Chicago, Chicago, IL 60637, USA; Pritzker School of Molecular Engineering, University of Chicago, Chicago, IL 60637, USA; Institute for Biophysical Dynamics, University of Chicago, Chicago, IL 60637, USA., Chiu IM; Department of Immunology, Harvard Medical School, Boston, MA 02115, USA. Electronic address: isaac_chiu@hms.harvard.edu.
Publikováno v:
Cell [Cell] 2022 Oct 27; Vol. 185 (22), pp. 4190-4205.e25. Date of Electronic Publication: 2022 Oct 14.