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pro vyhledávání: '"Ridder, Dick de"'
Autor:
Noordijk, Ben, Nijland, Reindert, Carrion, Victor J, Raaijmakers, Jos M, Ridder, Dick de, Lannoy, Carlos de
Publikováno v:
Bioinformatics Advances; 2023, Vol. 3 Issue 1, p1-7, 7p
Autor:
Li, Shuang, K. Joeri Van Der Velde, Ridder, Dick De, Dijk, Aalt D. J. Van, Soudis, Dimitrios, Zwerwer, Leslie R., Deelen, Patrick, Hendriksen, Dennis, Charbon, Bart, Gijn, Marielle E. Van, Abbott, Kristin, Sikkema-Raddatz, Birgit, Diemen, Cleo C. Van, Kerstjens-Frederikse, Wilhelmina S., Sinke, Richard J., Swertz, Morris A.
Additional file 1.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::21c22e4d61d2159d52f154bf71080ff3
Additional file 6 of Hap10: reconstructing accurate and long polyploid haplotypes using linked reads
Additional file 6: Table S4. Performance of SDhaP at different coverage levels, for a triploid genome with SNP rate of 0.001. The average molecule length and number of molecules per bead are 50 k and 10, respectively. The results are averaged over 5
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::03d28a7a40946f5af1845b8073901577
Additional file 5 of Hap10: reconstructing accurate and long polyploid haplotypes using linked reads
Additional file 5: Table S3. SDhaP with and without linked-read information. For the latter, the input data is considered as regular Illumina reads and barcodes are not used. The dataset is simulated using 1 Mb of chromosome one of potato genome with
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2b0382d2a4ea8c46ed4c87eb7a75e490
Additional file 4 of Hap10: reconstructing accurate and long polyploid haplotypes using linked reads
Additional file 4: Table S2. The impact of the convergence threshold on Hap10 performance. A triploid genome of 230 kb with a SNP rate of 0.001 is simulated. The average molecule length and number of molecules per bead are 50 k and 10, respectively.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::353da6b74c4a5946702da412a771b8d2
Additional file 3 of Hap10: reconstructing accurate and long polyploid haplotypes using linked reads
Additional file 3: Table S1. An example of the haplotype output format. We report the reconstructed haplotypes as a text file with a specific format similar to that of HapCUT2. Each haplotype block starts with a line describing the length of the hapl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5c56575b7e302855ed89c4f27404a595
Publikováno v:
Molecular Biology & Evolution; Jan2022, Vol. 39 Issue 1, p1-13, 13p
Additional file 3 Supplementary Methods: Evaluating the performance of CNV detection tools using simulated data. Evaluating the performance of CNV detection tools using real data. Applying Hecaton to tomato data.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4207374cafc4ebfcb3d557db50d9327d
Additional file 1 Figure S1: Performance of different CNV detection algorithms on the test set of Col-0–Cvi-0 and Suijing18 CNV events called from 10x coverage data. Figure S2: Interpretating the appropriate type of CNV from a set of novel adjacenc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::078e7c969769885833ca97a1e829b098
Autor:
Jonkheer, Eef M, Workum, Dirk-Jan M van, Anari, Siavash Sheikhizadeh, Brankovics, Balázs, Haan, Jorn R de, Berke, Lidija, Lee, Theo A J van der, Ridder, Dick de, Smit, Sandra
Publikováno v:
Bioinformatics; 9/15/2022, Vol. 38 Issue 18, p4403-4405, 3p