Zobrazeno 1 - 10 of 46 pro vyhledávání: '"Rico J E Derks"'
1
Akademický článek
XCMS-METLIN: data-driven metabolite, lipid, and chemical analysis
Autor: Martin Giera, Aries Aisporna, Winnie Uritboonthai, Linh Hoang, Rico J E Derks, Kara M Joseph, Erin S Baker, Gary Siuzdak
Publikováno v: Molecular Systems Biology, Vol 20, Iss 11, Pp 1153-1155 (2024)
In this Correspondence, G. Siuzdak and colleagues present XCMS-METLIN, an extensive resource for metabolomics, lipidomics, and chemical analysis.
Externí odkaz: https://doaj.org/article/16f66ba6666d4a4bb46ef692efafda5f
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2
Akademický článek
Generating Heterokaryotic Cells via Bacterial Cell-Cell Fusion
Autor: Shraddha Shitut, Meng-Jie Shen, Bart Claushuis, Rico J. E. Derks, Martin Giera, Daniel Rozen, Dennis Claessen, Alexander Kros
Publikováno v: Microbiology Spectrum, Vol 10, Iss 4 (2022)
ABSTRACT Fusion of cells is an important and common biological process that leads to the mixing of cellular contents and the formation of multinuclear cells. Cell fusion occurs when distinct membranes are brought into proximity of one another and mer
Externí odkaz: https://doaj.org/article/f0c5b8b5e1ce490ebea90419807d99d9
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3
High-Throughput Venomics
Autor: Julien Slagboom, Rico J. E. Derks, Raya Sadighi, Govert W. Somsen, Chris Ulens, Nicholas R. Casewell, Jeroen Kool
Publikováno v: Slagboom, J, Derks, R J E, Sadighi, R, Somsen, G W, Ulens, C, Casewell, N R & Kool, J 2023, ' High-Throughput Venomics ', Journal of Proteome Research, vol. 22, no. 6, pp. 1734-1746 . https://doi.org/10.1021/acs.jproteome.2c00780
In this study, we present high-throughput (HT) venomics, a novel analytical strategy capable of performing a full proteomic analysis of a snake venom within 3 days. This methodology comprises a combination of RP-HPLC-nanofractionation analytics, mass
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ad30c263813b581109c321aea3b12188
https://research.vu.nl/en/publications/16a7c66f-3285-45d6-8b0c-e1c5886df021
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4
A Clinically Selected Staphylococcus aureus clpP Mutant Survives Daptomycin Treatment by Reducing Binding of the Antibiotic and Adapting a Rod-Shaped Morphology
Autor: Lijuan Xu, Camilla Henriksen, Viktor Mebus, Romain Guérillot, Andreas Petersen, Nicolas Jacques, Jhih-Hang Jiang, Rico J. E. Derks, Elena Sánchez-López, Martin Giera, Kirsten Leeten, Timothy P. Stinear, Cécile Oury, Benjamin P. Howden, Anton Y. Peleg, Dorte Frees
Publikováno v: Antimicrobial Agents and Chemotherapy.
Daptomycin is a last-resort antibiotic used for the treatment of infections caused by Gram-positive antibiotic-resistant bacteria, such as methicillin-resistant Staphylococcus aureus (MRSA). Treatment failure is commonly linked to accumulation of poi
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::ff79e3b412c2508009198850ca51cdec
https://doi.org/10.1128/aac.00328-23
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6
Metabolomic and lipidomic signatures associated with activation of human cDC1 (BDCA3(+) /CD141(+) ) dendritic cells
Autor: Tom G. M. van Oorschot, Jessie A.G.L. van Buggenum, Martin Giera, Sarantos Kostidis, I. Jolanda M. de Vries, Farhan Basit, Rico J. E. Derks
Publikováno v: Immunology, 165, 1, pp. 99-109
Immunology, 165, 99-109
Immunology, 165(1), 99-109. WILEY
Contains fulltext : 283535.pdf (Publisher’s version ) (Open Access) Dendritic cells (DCs) bridge the connection between innate and adaptive immunity. DCs present antigens to T cells and stimulate potent cytotoxic T-cell responses. Metabolic reprogr
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f6a5c65285bc1e80428ce96a1cd15492
https://hdl.handle.net/2066/283535
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7
Akademický článek
Zebrafish Larvae Are a Suitable Model to Investigate the Metabolic Phenotype of Drug-Induced Renal Tubular Injury
Autor: Judit Morello, Rico J. E. Derks, Susana S. Lopes, Evelyne Steenvoorden, Emilia C. Monteiro, Oleg A. Mayboroda, Sofia A. Pereira
Publikováno v: Frontiers in Pharmacology, Vol 9 (2018)
Prevention and treatment of drug-induced renal injury (DIRI) rely on the availability of sensitive and specific biomarkers of early kidney injury and predictive animal models of human pathophysiology. This study aimed to evaluate the potential of zeb
Externí odkaz: https://doaj.org/article/0bad6e39b1fb47779b82fcf2d84d94cd
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8
Biliary Microbiota and Bile Acid Composition in Cholelithiasis
Autor: M.A. Fernández-Peralbo, Oleg A. Mayboroda, A. E. Sazonov, Rico J. E. Derks, Elena M. Knyazeva, Vyacheslav A. Petrov, Irina V. Saltykova, Nikolay V. Merzlikin
Publikováno v: BioMed Research International, Vol 2020 (2020)
BioMed Research International, 2020. HINDAWI LTD
BioMed Research International
Background. A functional interplay between BAs and microbial composition in gut is a well-documented phenomenon. In bile, this phenomenon is far less studied, and with this report, we describe the interactions between the BAs and microbiota in this c
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2ebd9fc2c88576fabc297f30b0569238
https://doi.org/10.1155/2020/1242364
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9
Neutral Loss Mass Spectral Data Enhances Molecular Similarity Analysis in METLIN
Autor: Aries Aisporna, H. Paul Benton, Andy Chen, Rico J. E. Derks, Jean Marie Galano, Martin Giera, Gary Siuzdak
Publikováno v: J Am Soc Mass Spectrom
Journal of The American Society for Mass Spectrometry, 33(3), 530-534. AMER CHEMICAL SOC
Neutral loss (NL) spectral data presents a mirror of MS(2) data, and is a valuable yet largely untapped resource for molecular discovery and similarity analysis. Tandem mass spectrometry (MS(2)) data is effective for the identification of known molec
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5cb02f20a891cb7ca19ef015005227b5
https://europepmc.org/articles/PMC10131246/
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10
Proteomics with Enhanced In-Source Fragmentation/Annotation: Applying XCMS-EISA Informatics and Q-MRM High-Sensitivity Quantification
Autor: Rico J. E. Derks, Martin Giera, Jingchuan Xue, Gary Siuzdak, Linh Hoang
Publikováno v: J Am Soc Mass Spectrom
Journal of The American Society for Mass Spectrometry, 32(11), 2644-2654. AMER CHEMICAL SOC
Enhanced in-source fragmentation/annotation (EISA) has recently been shown to produce fragment ions that match tandem mass spectrometry data across a wide range of small molecules. EISA has been developed to facilitate data-dependent acquisition (DDA
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1c54cf0132ad02979f07ac4d36103143
https://doi.org/10.1021/jasms.1c00188
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