Zobrazeno 1 - 10
of 16
pro vyhledávání: '"Richard Shippy"'
Autor:
Zhichao Liu, Shujian Wu, Reena Philip, Roderick V. Jensen, Xiao Zeng, Frank W. Samuelson, Wendy Czika, Gene Pennello, Fathi Elloumi, Frank Westermann, Matthew N. McCall, James C. Fuscoe, Yichao Wu, Mauro Delorenzi, Bart Barlogie, Nina Gonzaludo, Li Li, Joel S. Parker, Rong Chen, Zivana Tezak, Jianping Wu, Rafael A. Irizarry, Xijin Ge, Andreas Scherer, Xuejun Peng, Joshua Xu, Stephanie Fulmer-Smentek, Feng Qian, Giuseppe Jurman, Xuegong Zhang, Huixiao Hong, Richard A. Moffitt, Zhen Li, Yiming Zhou, Roberto Visintainer, Dilafruz Juraeva, Damir Herman, Joaquín Dopazo, Federico Goodsaid, Zhenqiang Su, Weiwei Shi, Chang Chang, Aaron Smalter, Mark R. Fielden, Alan H. Roter, Yvonne Kahlert, Junwei Wang, Shao Li, Pierre R. Bushel, Jianying Li, Yiyu Cheng, Matthias Kohl, David Montaner, Darlene R. Goldstein, Qian Xie, Raj K. Puri, Chen Zhao, Richard J. Brennan, Li Zheng, Menglong Li, Anne Bergstrom Lucas, Jun Huan, Zhiguang Li, Jing Han, Brandon D. Gallas, Guozhen Liu, Matthew Woods, Kevin C. Dorff, Danielle Thierry-Mieg, Xiaohui Fan, Wenjun Bao, Lakshmi Vishnuvajjala, Qinglan Sun, George Mulligan, Pan Du, Sadik A. Khuder, Christos Sotiriou, Xutao Deng, John Zhang, Jie Cheng, Charles Wang, Marina Tsyganova, Leming Shi, Sue Jane Wang, Kenneth R. Hess, Nianqing Xiao, Jennifer G. Catalano, Russell S. Thomas, Rong Tang, Frank Staedtler, Wen Luo, David J. Dix, Benedikt Brors, Juergen Von Frese, W. Fraser Symmans, Yang Feng, Lu Meng, Samantha Riccadonna, Gregory Campbell, Charles D. Johnson, John H. Phan, Johan Trygg, Ron L. Peterson, Sheng Zhu, Jie Liu, May D. Wang, Dhivya Arasappan, John D. Shaughnessy, R. Mitchell Parry, Tatiana Nikolskaya, Youping Deng, Stephen C. Harris, Tieliu Shi, Manuel Madera, Jeff W. Chou, Grier P. Page, Baitang Ning, Jian Cui, Liang Zhang, Eric Wang, Russell D. Wolfinger, Venkata Thodima, J. Luo, Min Zhang, Timothy Davison, Sheng Zhong, Guido Steiner, Pei Yi Tan, Yi Ren, Frank Berthold, Padraic Neville, Viswanath Devanarayan, Yaron Turpaz, Ying Liu, Uwe Scherf, Jialu Zhang, Lei Xu, Jennifer Fostel, Shengzhu Si, Christophe G. Lambert, Jianqing Fan, Yanen Li, Rui Jiang, Cesare Furlanello, Zhining Wen, Jianping Huang, Lajos Pusztai, Li Lee, Mat Soukup, Brett T. Thorn, Joseph D. Shambaugh, Hong Fang, S. Vega, Andreas Buness, Todd H. Stokes, Christos Hatzis, Waleed A. Yousef, Lun Yang, Francesca Demichelis, Nathan D. Price, Donald N. Halbert, Qiang Shi, Ignacio Medina, Martin Schumacher, Stephen J. Walker, Wendell D. Jones, Fabien Campagne, Li Guo, James C. Willey, Joseph Meehan, Weigong Ge, Hans Bitter, Max Bylesjö, Jing Cheng, Matthias Fischer, Richard S. Paules, Piali Mukherjee, Jean Thierry-Mieg, Laurent Gatto, Shicai Fan, Roland Eils, Tzu Ming Chu, Yuri Nikolsky, Brian Quanz, André Oberthuer, Simon Lin, Francisco Martinez-Murillo, Damir Dosymbekov, Jaeyun Sung, Minjun Chen, Richard Shippy, Samir Lababidi, Edward K. Lobenhofer, Vlad Popovici, Weida Tong, Quan Zhen Li, Dalila B. Megherbi, Roger Perkins, Wei Wang, K. Miclaus, Richard S. Judson, Weijie Chen
Publikováno v:
Nature Biotechnology. 28:827-838
Gene expression data from microarrays are being applied to predict preclinical and clinical endpoints, but the reliability of these predictions has not been established. In the MAQC-II project, 36 independent teams analyzed six microarray data sets t
Autor:
Natalia Novoradovskaya, Anne Bergstrom Lucas, Xu Guo, James C. Willey, Janet A. Warrington, Cecilie Boysen, P. Scott Pine, Michael A Wilson, Roderick V. Jensen, Paul K. Wolber, Yaron Turpaz, Richard Shippy, Jean Thierry-Mieg, Danielle Thierry-Mieg, Robert Setterquist, Yongming Andrew Sun, Leming Shi, Wendell D. Jones, Stephanie Fulmer-Smentek, Charles D. Johnson, Eugene Chudin, Adam Papallo, Shawn C. Baker, Damir Herman
Publikováno v:
Nature Biotechnology. 24:1123-1131
We have assessed the utility of RNA titration samples for evaluating microarray platform performance and the impact of different normalization methods on the results obtained. As part of the MicroArray Quality Control project, we investigated the per
Autor:
Alan Brunner, Glenda C. Delenstarr, Timothy K. McDaniel, Lisa J. Croner, Chunlin Xiao, Raymond R. Samaha, Wen Yang, Lei Guo, Stephen J. Walker, Terry Osborn, Federico Goodsaid, P. Scott Pine, J. Christopher Corton, Yuling Luo, Yaron Turpaz, Alexander Wong, Raj K. Puri, Jean Thierry-Mieg, Michael A Wilson, Anne Bergstrom Lucas, Heather Harbottle, Eli Hatchwell, Donna Brown, Jie Wu, Shawn Levy, Wendell D. Jones, Ola Myklebost, Craig A. Hauser, Vincent Bertholet, J. Eugene LeClerc, David J. Dix, Scott A. Jackson, Eugene Chudin, Beena Vallanat, Susan D. Hester, Mark Schena, Barry A. Rosenzweig, James J. Chen, Paul K. Wolber, Adam Papallo, Yongming Andrew Sun, Shawn C. Baker, Uwe Scherf, Zoltan Szallasi, William Slikker, Kenneth L. Philips, Xutao Deng, Lajos Pusztai, Sue Jane Wang, Janet Hager, Xu Guo, Tao Han, Charles Wang, Frank Staedtler, Hongmei Sun, Svetlana Shchegrova, Christopher Davies, Liang Zhang, James C. Willey, Yaping Zong, Kathleen Y. Lee, Paul K. Haje, James C. Fuscoe, Ying Liu, Natalia Novoradovskaya, Russell D. Wolfinger, Kathryn Gallagher, Roderick V. Jensen, Feng Qian, Wenjun Bao, Christophe Van, Bud Bromley, Janet A. Warrington, Leming Shi, Tucker A. Patterson, David Dorris, Huixiao Hong, Winston Patrick Kuo, Hongzu Ren, Xiaoxi Megan Cao, Cecilie Boysen, Michael S. Orr, Danielle Thierry-Mieg, Xiaohui Fan, Felix W. Frueh, Gary P. Schroth, Yonghong Wang, Chunmei Liu, Yunqing Ma, Shashi Amur, Lu Zhang, Michael Lombardi, Dave D. Smith, Tzu Ming Chu, Jun Xu, Charles D. Johnson, Baitang Ning, Timothy Davison, Botoul Maqsodi, Karol L. Thompson, Thomas A. Cebula, Richard Shippy, Edward K. Lobenhofer, Weida Tong, Quan Zhen Li, Catalin Barbacioru, Qian Xie, Aron Charles Eklund, Ernest S. Kawasaki, Patrick J. Collins, Zivana Tezak, Elizabeth Herness Peters, Francoise de Longueville, Stephanie Fulmer-Smentek, Hong Fang, Patrick Hurban, Scott R. Magnuson, Hanlee P. Ji, Roger Perkins, Mitch Rosen, Ron L. Peterson, Weigong Ge, Stephen C. Harris, Sheng Zhong, Charles R. Knight, Damir Herman, Zhenqiang Su, Roger D. Canales, Nan Mei, Jing Cheng, Irina Tikhonova, Gavin M. Fischer, Laura H. Reid, Robert Setterquist, Yvonne P. Dragan, Jing Han, John F. Corson
Publikováno v:
Nature Biotechnology. 24:1151-1161
Over the last decade, the introduction of microarray technology has had a profound impact on gene expression research. The publication of studies with dissimilar or altogether contradictory results, obtained using different microarray platforms to an
Autor:
Russell D. Wolfinger, Tzu-Ming Chu, Hong Fang, Svetlana Shchegrova, Sue-Jane Wang, Richard Shippy, Lei Guo, Weida Tong, Yongming Andrew Sun, Janet A. Warrington, Xu Guo, Xiaohui Fan, Anne Bergstrom Lucas, Huixiao Hong, Wenjun Bao, Leming Shi, Patrick J. Collins, Michael S. Orr
Publikováno v:
Nature Biotechnology. 24:1132-1139
External RNA controls (ERCs), although important for microarray assay performance assessment, have yet to be fully implemented in the research community. As part of the MicroArray Quality Control (MAQC) study, two types of ERCs were implemented and e
Autor:
Joe Hackett, Kathleen F. Kerr, Garry Miyada, Leming Shi, Kathy Y Lee, Paul K. Wolber, Michael J. Fero, Timothy J Sendera, Walter H. Koch, Steven R. Bauer, Chitra Manohar, Rosalie K. Elespuru, James C. Fuscoe, Raymond R. Samaha, Richard P. Beyer, Michael A Wilson, Zora Modrusan, Patrick Gilles, Bud Bromley, Renata Zadro, Carole Foy, Laura H. Reid, Jesus Soriano, Robert Setterquist, Marc L. Salit, Federico Goodsaid, Elizabeth A. Wagar, Helen C. Causton, Shawn C. Baker, Z. Lewis Liu, Tamma Kaysser-Kranich, Richard Shippy, Richard D. Hockett, Chunmei Liu, Janet A. Warrington, David Gerhold, Helen Parkes, Gretchen L. Kiser, James D. Brenton, Ernest S. Kawasaki, Uwe Scherf, Pranvera Ikonomi, Frederike Wilmer, Xu Guo, Xiaolian Gao, Michael P Conley, Rafael A. Irizarry, Raj K. Puri, Anne Bergstrom Lucas, John Burrill, Thomas B. Ryder, Xiaoning Wu, Mickey Williams
Publikováno v:
Nature Methods. 2:731-734
Standard controls and best practice guidelines advance acceptance of data from research, preclinical and clinical laboratories by providing a means for evaluating data quality. The External RNA Controls Consortium (ERCC) is developing commonly agreed
Autor:
Leming D. Shi, Wendell D. Jones, Roderick V. Jensen, Stephen C. Harris, Roger G. Perkins, Federico M. Goodsaid, Lei Guo, Lisa J. Croner, Cecilie Boysen, Hong Fang, Shashi Amur, Wenjun Bao, Catalin C. Barbacioru, Vincent Bertholet, Xiaoxi Megan Cao, Tzu-Ming Chu, Patrick J. Collins, Xiao-hui Fan, Felix W. Frueh, James C. Fuscoe, Xu Guo, Jing Han, Damir Herman, Huixiao Hong, Ernest S. Kawasaki, Quan-Zhen Li, Yuling Luo, Yunqing Ma, Nan Mei, Ron L. Peterson, Raj K. Puri, Feng Qian, Richard Shippy, Zhenqiang Su, Yongming Andrew Sun, Hongmei Sun, Brett Thorn, Yaron Turpaz, Charles Wang, Sue-Jane Wang, Janet A. Warrington, James C. Willey, Jie Wu, Qian Xie, Liang Zhang, Lu Zhang, Sheng Zhong, Russell D. Wolfinger, Weida Tong
Publikováno v:
Nature Precedings
Reproducibility is a fundamental requirement in scientific experiments and clinical contexts. Recent publications raise concerns about the reliability of microarray technology because of the apparent lack of agreement between lists of differentially
Autor:
Catalin Barbacioru, Jane Wang, Wendell D. Jones, Sheng Zhong, Qian Xie, Ernest S. Kawasaki, James J. Chen, Janet A. Warrington, Patrick J. Collins, David Geffen, Charles Wang, Huixiao Hong, Cecilie Boysen, Roger Perkins, Hong Fang, Federico Goodsaid, Harry Hines Boulevard, Lei Guo, Xiaoxi Megan Cao, Richard Shippy, James C. Fuscoe, Brett T. Thorn, Wenjun Bao, Meridian Parkway, Weida Tong, Quan Zhen Li, Xiaohui Fan, Yuling Luo, Leming Shi, Vincent Bertholet, Ron L. Peterson, Raj K. Puri, Shashi Amur, Xu Guo, Russell D. Wolfinger, Stephen C. Harris, Lisa J. Croner, Tzu-Ming Chu, Jie Wu, Jing Han, Roderick V. Jensen, Feng Qian, Nan Mei, Damir Herman, Zhenqiang Su, Hongmei Sun, Liang Zhang, Yaron Turpaz, James C. Willey, Felix W. Frueh, Yongming Andrew Sun
Publikováno v:
Nature Precedings
Reproducibility is a fundamental requirement in scientific experiments and clinical contexts. Recent publications raise concerns about the reliability of microarray technology because of the apparent lack of agreement between lists of differentially
Autor:
Nan Mei, Leming Shi, Lei Guo, Richard Shippy, Lu Zhang, Edward K. Lobenhofer, Weida Tong, Jun Xu, Tao Chen, Yongming Andrew Sun, Xutao Deng, Federico Goodsaid, Damir Herman, Charles Wang, K. L. Phillips, Patrick Hurban, Yvonne P. Dragan, Stephen C. Harris
Publikováno v:
Nature biotechnology. 24(9)
To validate and extend the findings of the MicroArray Quality Control (MAQC) project, a biologically relevant toxicogenomics data set was generated using 36 RNA samples from rats treated with three chemicals (aristolochic acid, riddelliine and comfre
Autor:
Timothy J Sendera, Richard Shippy, John P. Alsobrook, Tamma Kaysser-Kranich, Chockalingam Palaniappan, Randall J. Lockner, George S. Watts
Publikováno v:
BMC Genomics
BMC Genomics, Vol 5, Iss 1, p 61 (2004)
BMC Genomics, Vol 5, Iss 1, p 61 (2004)
Background Despite the widespread use of microarrays, much ambiguity regarding data analysis, interpretation and correlation of the different technologies exists. There is a considerable amount of interest in correlating results obtained between diff
Autor:
Max W, Richardson, Linda, Hostalek, Michelle, Dobson, Jason, Hu, Richard, Shippy, Andrew, Siwkowski, Jonathan D, Marmur, Kamel, Khalili, Paul E, Klotman, Arnold, Hampel, Jay, Rappaport
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 252
Hairpin ribozymes derived from the negative strand of satellite RNAs from the tobacco ringspot virus (sTRSV) can be engineered to target and cleave a variety of heterologous RNAs from both cellular and viral transcripts. Attention to design and targe