Zobrazeno 1 - 10
of 38
pro vyhledávání: '"Richard R, Rodrigues"'
Autor:
Richard R. Rodrigues, Manoj Gurung, Zhipeng Li, Manuel García-Jaramillo, Renee Greer, Christopher Gaulke, Franziska Bauchinger, Hyekyoung You, Jacob W. Pederson, Stephany Vasquez-Perez, Kimberly D. White, Briana Frink, Benjamin Philmus, Donald B. Jump, Giorgio Trinchieri, David Berry, Thomas J. Sharpton, Amiran Dzutsev, Andrey Morgun, Natalia Shulzhenko
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-15 (2021)
Abstract Western diet (WD) is one of the major culprits of metabolic disease including type 2 diabetes (T2D) with gut microbiota playing an important role in modulating effects of the diet. Herein, we use a data-driven approach (Transkingdom Network
Externí odkaz:
https://doaj.org/article/2d75b1d838834d4e88d47f7baca85691
Publikováno v:
Microbiome, Vol 7, Iss 1, Pp 1-18 (2019)
Abstract Background Soybean (Glycine max) and other legumes are key crops grown around the world, providing protein and nutrients to a growing population, in a way that is more sustainable than most other cropping systems. Diazotrophs inhabiting root
Externí odkaz:
https://doaj.org/article/209177758fef46f9b26f8f6f0759726b
Autor:
John A. McCulloch, Jonathan H. Badger, Nikki Cannon, Richard R. Rodrigues, Michael Valencia, Jennifer J. Barb, Miriam R. Fernandes, Ascharya Balaji, Lisa Crowson, Colm O’hUigin, Amiran Dzutsev, Giorgio Trinchieri
Shotgun microbiome sequencing analysis presents several challenges to accurately and consistently depict sample composition and functional potential. Here we present a two-part framework – JAMS (Just a Microbiology System) – whereby with raw fast
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::02b863c63d44421d5f21bf7a0084fe64
https://doi.org/10.1101/2023.03.03.531026
https://doi.org/10.1101/2023.03.03.531026
Autor:
Nolan K. Newman, Matthew Macovsky, Richard R. Rodrigues, Amanda M. Bruce, Jacob W. Pederson, Sankalp S Patil, Jyothi Padiadpu, Amiran K. Dzutsev, Natalia Shulzhenko, Giorgio Trinchieri, Kevin Brown, Andrey Morgun
Technological advances have generated tremendous amounts of high-throughput omics data. Integrating data from multiple cohorts and diverse omics types from new and previously published studies can offer a holistic view of a biological system and aid
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f207df1aaad4db1f0498e3df1713091e
https://doi.org/10.1101/2023.02.22.529449
https://doi.org/10.1101/2023.02.22.529449
Publikováno v:
PeerJ, Vol 6, p e4395 (2018)
Microbial diversity on earth is extraordinary, and soils alone harbor thousands of species per gram of soil. Understanding how this diversity is sorted and selected into habitat niches is a major focus of ecology and biotechnology, but remains only v
Externí odkaz:
https://doaj.org/article/46bdbe7570bd42cfb2fc7e4dcebcd69b
Autor:
Richard R. Rodrigues, Renee L. Greer, Xiaoxi Dong, Karen N. DSouza, Manoj Gurung, Jia Y. Wu, Andrey Morgun, Natalia Shulzhenko
Publikováno v:
Frontiers in Microbiology, Vol 8 (2017)
The gut microbiome plays an important role in health and disease. Antibiotics are known to alter gut microbiota, yet their effects on glucose tolerance in lean, normoglycemic mice have not been widely investigated. In this study, we aimed to explore
Externí odkaz:
https://doaj.org/article/48e44a872c3f4404be6ce779d6adc358
Autor:
Zhipeng Li, Manoj Gurung, Richard R. Rodrigues, Jyothi Padiadpu, Nolan K. Newman, Nathan P. Manes, Jacob W. Pederson, Renee L. Greer, Stephany Vasquez-Perez, Hyekyoung You, Kaito A. Hioki, Zoe Moulton, Anna Fel, Dominic De Nardo, Amiran K. Dzutsev, Aleksandra Nita-Lazar, Giorgio Trinchieri, Natalia Shulzhenko, Andrey Morgun
Publikováno v:
Journal of Experimental Medicine. 219
Microbiota contribute to the induction of type 2 diabetes by high-fat/high-sugar (HFHS) diet, but which organs/pathways are impacted by microbiota remain unknown. Using multiorgan network and transkingdom analyses, we found that microbiota-dependent
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3a11cd6fa816170bef5fceb54e756739
https://doi.org/10.1084/jem.20220017
https://doi.org/10.1084/jem.20220017
Autor:
Richelle DeBlasio, Marie Vétizou, Jonathan H. Badger, Giorgio Trinchieri, Stephanie Prescott, Hassane M. Zarour, Miriam R. Fernandes, John A. McCulloch, Bochra Zidi, Richard R. Rodrigues, Amir A. Borhani, Yana G. Najjar, Amy Rose, John M. Kirkwood, Shuowen Zhang, Hong Wang, Carmine Menna, Quanquan Ding, Scarlett J. Ernst, Amiran K. Dzutsev, Alicia M. Cole, Joe Marc Chauvin, Robert M. Morrison, Ornella Pagliano, Diwakar Davar, Andrey Morgun, Ascharya K. Balaji, Raquel Galvão Figueredo Costa, Howard M. Dubner, Ivan Vujkovic-Cvijin, Yasmine Belkaid, Marc Schwartz
Publikováno v:
Science. 371:595-602
New fecal microbiota for cancer patients The composition of the gut microbiome influences the response of cancer patients to immunotherapies. Baruch et al. and Davar et al. report first-in-human clinical trials to test whether fecal microbiota transp
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::06cda59c60ac26ba7edf8744836a549a
https://doi.org/10.1126/science.abf3363
https://doi.org/10.1126/science.abf3363
Publikováno v:
Frontiers in Microbiology, Vol 7 (2016)
Honey bees (Apis mellifera) are the primary pollinators of major horticultural crops. Over the last few decades, a substantial decline in honey bees and their colonies have been reported. While a plethora of factors could contribute to the putative d
Externí odkaz:
https://doaj.org/article/a3e57350e3c84fb6964af0aae2da6e04
Autor:
Christine N. Spencer, Jennifer L. McQuade, Vancheswaran Gopalakrishnan, John A. McCulloch, Marie Vetizou, Alexandria P. Cogdill, Md A. Wadud Khan, Xiaotao Zhang, Michael G. White, Christine B. Peterson, Matthew C. Wong, Golnaz Morad, Theresa Rodgers, Jonathan H. Badger, Beth A. Helmink, Miles C. Andrews, Richard R. Rodrigues, Andrey Morgun, Young S. Kim, Jason Roszik, Kristi L. Hoffman, Jiali Zheng, Yifan Zhou, Yusra B. Medik, Laura M. Kahn, Sarah Johnson, Courtney W. Hudgens, Khalida Wani, Pierre-Olivier Gaudreau, Angela L. Harris, Mohamed A. Jamal, Erez N. Baruch, Eva Perez-Guijarro, Chi-Ping Day, Glenn Merlino, Barbara Pazdrak, Brooke S. Lochmann, Robert A. Szczepaniak-Sloane, Reetakshi Arora, Jaime Anderson, Chrystia M. Zobniw, Eliza Posada, Elizabeth Sirmans, Julie Simon, Lauren E. Haydu, Elizabeth M. Burton, Linghua Wang, Minghao Dang, Karen Clise-Dwyer, Sarah Schneider, Thomas Chapman, Nana-Ama A. S. Anang, Sheila Duncan, Joseph Toker, Jared C. Malke, Isabella C. Glitza, Rodabe N. Amaria, Hussein A. Tawbi, Adi Diab, Michael K. Wong, Sapna P. Patel, Scott E. Woodman, Michael A. Davies, Merrick I. Ross, Jeffrey E. Gershenwald, Jeffrey E. Lee, Patrick Hwu, Vanessa Jensen, Yardena Samuels, Ravid Straussman, Nadim J. Ajami, Kelly C. Nelson, Luigi Nezi, Joseph F. Petrosino, P. Andrew Futreal, Alexander J. Lazar, Jianhua Hu, Robert R. Jenq, Michael T. Tetzlaff, Yan Yan, Wendy S. Garrett, Curtis Huttenhower, Padmanee Sharma, Stephanie S. Watowich, James P. Allison, Lorenzo Cohen, Giorgio Trinchieri, Carrie R. Daniel, Jennifer A. Wargo
Publikováno v:
Science (New York, N.Y.). 374(6575)
Another benefit of dietary fiber The gut microbiome can modulate the immune system and influence the therapeutic response of cancer patients, yet the mechanisms underlying the effects of microbiota are presently unclear. Spencer et al . add to our un
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::333675406957cdc475454320562634b6
https://pubmed.ncbi.nlm.nih.gov/35235771
https://pubmed.ncbi.nlm.nih.gov/35235771