Zobrazeno 1 - 10
of 368
pro vyhledávání: '"Richard Durbin"'
Autor:
Pío Sierra, Richard Durbin
Publikováno v:
Mobile DNA, Vol 15, Iss 1, Pp 1-13 (2024)
Abstract Background Transposable Elements (TEs) are segments of DNA, typically a few hundred base pairs up to several tens of thousands bases long, that have the ability to generate new copies of themselves in the genome. Most existing methods used t
Externí odkaz:
https://doaj.org/article/cbe4a24c943949a0a968957b307c2ab8
Autor:
Nicol Rueda-M, Carolina Pardo-Diaz, Gabriela Montejo-Kovacevich, W Owen McMillan, Krzysztof M Kozak, Carlos F Arias, Jonathan Ready, Shane McCarthy, Richard Durbin, Chris D Jiggins, Joana I Meier, Camilo Salazar
Publikováno v:
PLoS Genetics, Vol 20, Iss 7, p e1011318 (2024)
Sex chromosomes are evolutionarily labile in many animals and sometimes fuse with autosomes, creating so-called neo-sex chromosomes. Fusions between sex chromosomes and autosomes have been proposed to reduce sexual conflict and to promote adaptation
Externí odkaz:
https://doaj.org/article/6410abf60eb64ea484414f4808065d0e
Autor:
Marcela Uliano-Silva, João Gabriel R. N. Ferreira, Ksenia Krasheninnikova, Darwin Tree of Life Consortium, Giulio Formenti, Linelle Abueg, James Torrance, Eugene W. Myers, Richard Durbin, Mark Blaxter, Shane A. McCarthy
Publikováno v:
BMC Bioinformatics, Vol 24, Iss 1, Pp 1-13 (2023)
Abstract Background PacBio high fidelity (HiFi) sequencing reads are both long (15–20 kb) and highly accurate (> Q20). Because of these properties, they have revolutionised genome assembly leading to more accurate and contiguous genomes. In eukaryo
Externí odkaz:
https://doaj.org/article/83a929ea54734f328969ac7528d3ad5f
Autor:
Iliana Bista, Jonathan M. D. Wood, Thomas Desvignes, Shane A. McCarthy, Michael Matschiner, Zemin Ning, Alan Tracey, James Torrance, Ying Sims, William Chow, Michelle Smith, Karen Oliver, Leanne Haggerty, Walter Salzburger, John H. Postlethwait, Kerstin Howe, Melody S. Clark, H. William Detrich, C.-H. Christina Cheng, Eric A. Miska, Richard Durbin
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-16 (2023)
Abstract Numerous novel adaptations characterise the radiation of notothenioids, the dominant fish group in the freezing seas of the Southern Ocean. To improve understanding of the evolution of this iconic fish group, here we generate and analyse new
Externí odkaz:
https://doaj.org/article/a84ba1265012436ab251e62f2ecd1c47
Publikováno v:
Wellcome Open Research, Vol 8 (2023)
Sequences derived from circular DNA molecules (i.e. most bacterial, viral and plastid genomes) are expected to be linearised and rotated to a common start position for most downstream analyses including alignment. Despite this being a common and stra
Externí odkaz:
https://doaj.org/article/511b9ae8c04e4c0485b07905f739cf83
Autor:
Juwan Kim, Chul Lee, Byung June Ko, Dong Ahn Yoo, Sohyoung Won, Adam M. Phillippy, Olivier Fedrigo, Guojie Zhang, Kerstin Howe, Jonathan Wood, Richard Durbin, Giulio Formenti, Samara Brown, Lindsey Cantin, Claudio V. Mello, Seoae Cho, Arang Rhie, Heebal Kim, Erich D. Jarvis
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-29 (2022)
Abstract Background Many short-read genome assemblies have been found to be incomplete and contain mis-assemblies. The Vertebrate Genomes Project has been producing new reference genome assemblies with an emphasis on being as complete and error-free
Externí odkaz:
https://doaj.org/article/c65a95c7709445a7996240f8b36d38ef
Publikováno v:
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-16 (2021)
Abstract Background Efficient and effective genome scaffolding tools are still in high demand for generating reference-quality assemblies. While long read data itself is unlikely to create a chromosome-scale assembly for most eukaryotic species, the
Externí odkaz:
https://doaj.org/article/40599c4ac5b24cfa8f1891cdcffd80ae
Autor:
Grégoire Vernaz, Milan Malinsky, Hannes Svardal, Mingliu Du, Alexandra M. Tyers, M. Emília Santos, Richard Durbin, Martin J. Genner, George F. Turner, Eric A. Miska
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-13 (2021)
The Lake Malawi cichlid fishes are an example of extreme vertebrate radiation; however, there is very little sequence divergence among the species. Here the authors present a comparative genome-wide methylome study to suggest DNA methylation played a
Externí odkaz:
https://doaj.org/article/1a787f2ae63e44f3b0f679f4ecaa9219
Autor:
Marilou Boddé, Alex Makunin, Diego Ayala, Lemonde Bouafou, Abdoulaye Diabaté, Uwem Friday Ekpo, Mahamadi Kientega, Gilbert Le Goff, Boris K Makanga, Marc F Ngangue, Olaitan Olamide Omitola, Nil Rahola, Frederic Tripet, Richard Durbin, Mara KN Lawniczak
Publikováno v:
eLife, Vol 11 (2022)
The ANOSPP amplicon panel is a genus-wide targeted sequencing panel to facilitate large-scale monitoring of Anopheles species diversity. Combining information from the 62 nuclear amplicons present in the ANOSPP panel allows for a more senstive and sp
Externí odkaz:
https://doaj.org/article/8d0433063c074bedb1a074954eea6a8c
Autor:
Giulio Formenti, Arang Rhie, Jennifer Balacco, Bettina Haase, Jacquelyn Mountcastle, Olivier Fedrigo, Samara Brown, Marco Rosario Capodiferro, Farooq O. Al-Ajli, Roberto Ambrosini, Peter Houde, Sergey Koren, Karen Oliver, Michelle Smith, Jason Skelton, Emma Betteridge, Jale Dolucan, Craig Corton, Iliana Bista, James Torrance, Alan Tracey, Jonathan Wood, Marcela Uliano-Silva, Kerstin Howe, Shane McCarthy, Sylke Winkler, Woori Kwak, Jonas Korlach, Arkarachai Fungtammasan, Daniel Fordham, Vania Costa, Simon Mayes, Matteo Chiara, David S. Horner, Eugene Myers, Richard Durbin, Alessandro Achilli, Edward L. Braun, Adam M. Phillippy, Erich D. Jarvis, The Vertebrate Genomes Project Consortium
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-22 (2021)
Abstract Background Modern sequencing technologies should make the assembly of the relatively small mitochondrial genomes an easy undertaking. However, few tools exist that address mitochondrial assembly directly. Results As part of the Vertebrate Ge
Externí odkaz:
https://doaj.org/article/cc71db7a3dd94d1194b7e3358514ae34