Zobrazeno 1 - 10
of 49
pro vyhledávání: '"Riccardo Delli Ponti"'
Autor:
Yan Hong, Jhing Yein Tan, Huiyu Xue, Mei Lun Chow, Mohamed Ali, Arthur Ng, Abigail Leong, Jeb Yeo, Shao Ming Koh, Megan Shi Ying Tang, Yan Yi Lee, Amy Mei Fun Choong, Serena Mei Lyn Lee, Riccardo Delli Ponti, Perry M. Chan, Daryl Lee, Jia Yih Wong, Marek Mutwil, Yok King Fong
Publikováno v:
Journal of Fungi, Vol 9, Iss 4, p 460 (2023)
Mature tropical urban trees are susceptible to root and trunk rot caused by pathogenic fungi. A metagenomic survey of such fungi was carried out on 210 soil and tissue samples collected from 134 trees of 14 common species in Singapore. Furthermore, 1
Externí odkaz:
https://doaj.org/article/674eebeceb9f467fa710e1e58235f513
Autor:
Riccardo Delli Ponti, Marek Mutwil
Publikováno v:
BMC Genomics, Vol 22, Iss 1, Pp 1-14 (2021)
Abstract Background With more than 300 million potentially infected people every year, and with the expanded habitat of mosquitoes due to climate change, Dengue virus (DENV) cannot be considered anymore only a tropical disease. The RNA secondary stru
Externí odkaz:
https://doaj.org/article/0af7a407886e4581af43ecb8d7a9b228
Publikováno v:
Frontiers in Virology, Vol 2 (2022)
Identifying structural elements in long and complex RNAs, such as long non-coding and RNA viruses, can shed light on the functionality and mechanisms of such RNAs. Here we present RNAvigator, a tool able to identify elements of structural importance
Externí odkaz:
https://doaj.org/article/466096f325724ff29982e05fb073e09c
Autor:
Jolyn Jia Jia Lim, Jace Koh, Jia Rong Moo, Erielle Marie Fajardo Villanueva, Dhira Anindya Putri, Yuen Shan Lim, Wei Song Seetoh, Sriya Mulupuri, Janice Wan Zhen Ng, Nhi Le Uyen Nguyen, Rinta Reji, Herman Foo, Margaret Xuan Zhao, Tong Ling Chan, Edbert Edric Rodrigues, Ryanjit Singh Kairon, Ker Min Hee, Natasha Cassandra Chee, Ann Don Low, Zoe Hui Xin Chen, Shan Chun Lim, Vanessa Lunardi, Tuck Choy Fong, Cherlyn Xin'Er Chua, Kenny Ting Sween Koh, Irene Julca, Riccardo Delli-Ponti, Jonathan Wei Xiong Ng, Marek Mutwil
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 18, Iss , Pp 3788-3795 (2020)
The fungi kingdom is composed of eukaryotic heterotrophs, which are responsible for balancing the ecosystem and play a major role as decomposers. They also produce a vast diversity of secondary metabolites, which have antibiotic or pharmacological pr
Externí odkaz:
https://doaj.org/article/fe3787653ed84ea88af7cb7b8d917913
Publikováno v:
Viruses, Vol 14, Iss 8, p 1795 (2022)
Most pandemics of recent decades can be traced to RNA viruses, including HIV, SARS, influenza, dengue, Zika, and SARS-CoV-2. These RNA viruses impose considerable social and economic burdens on our society, resulting in a high number of deaths and hi
Externí odkaz:
https://doaj.org/article/3cdd070808aa435dad61b7888a4cf30b
Publikováno v:
Frontiers in Plant Science, Vol 11 (2021)
Plants produce a vast array of chemical compounds that we use as medicines and flavors, but these compounds’ biosynthetic pathways are still poorly understood. This paucity precludes us from modifying, improving, and mass-producing these specialize
Externí odkaz:
https://doaj.org/article/27d729599bc4456fab69488d1fd1718c
Publikováno v:
Frontiers in Molecular Biosciences, Vol 5 (2018)
To compare the secondary structure profiles of RNA molecules we developed the CROSSalign method. CROSSalign is based on the combination of the Computational Recognition Of Secondary Structure (CROSS) algorithm to predict the RNA secondary structure p
Externí odkaz:
https://doaj.org/article/2b89942506db4984af50c52af6db7369
Autor:
Fernando Cid-Samper, Mariona Gelabert-Baldrich, Benjamin Lang, Nieves Lorenzo-Gotor, Riccardo Delli Ponti, Lies-Anne W.F.M. Severijnen, Benedetta Bolognesi, Ellen Gelpi, Renate K. Hukema, Teresa Botta-Orfila, Gian Gaetano Tartaglia
Publikováno v:
Cell Reports, Vol 25, Iss 12, Pp 3422-3434.e7 (2018)
Summary: Recent evidence indicates that specific RNAs promote the formation of ribonucleoprotein condensates by acting as scaffolds for RNA-binding proteins (RBPs). We systematically investigated RNA-RBP interaction networks to understand ribonucleop
Externí odkaz:
https://doaj.org/article/a315cd43ede34772b46e8518544ba7c0
Autor:
Riccardo Delli Ponti, Laura Broglia, Andrea Vandelli, Alexandros Armaos, Marc Torrent Burgas, Natalia Sanchez de Groot, Gian Gaetano Tartaglia
RNA molecules undergo a number of chemical modifications whose effects can alter their structure and molecular interactions. Previous studies have shown that RNA editing can impact the formation of ribonucleoprotein complexes and influence the assemb
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dec148c8352019a19480508dac7d96c5
https://doi.org/10.1101/2022.05.30.494057
https://doi.org/10.1101/2022.05.30.494057
Publikováno v:
Methods in Molecular Biology ISBN: 9781071618509
The new flow of high-throughput RNA secondary structure data coming from different techniques allowed the further development of machine learning approaches. We developed CROSS and CROSSalive, two algorithms trained on experimental data able to predi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3c1d67d23eaf23df63c50c6ecaf719d9
https://doi.org/10.1007/978-1-0716-1851-6_2
https://doi.org/10.1007/978-1-0716-1851-6_2