A roadmap for gene functional characterisation in crops with large genomes: Lessons from polyploid wheat

Autor: Nikolai M Adamski, Philippa Borrill, Jemima Brinton, Sophie A Harrington, Clémence Marchal, Alison R Bentley, William D Bovill, Luigi Cattivelli, James Cockram, Bruno Contreras-Moreira, Brett Ford, Sreya Ghosh, Wendy Harwood, Keywan Hassani-Pak, Sadiye Hayta, Lee T Hickey, Kostya Kanyuka, Julie King, Marco Maccaferrri, Guy Naamati, Curtis J Pozniak, Ricardo H Ramirez-Gonzalez, Carolina Sansaloni, Ben Trevaskis, Luzie U Wingen, Brande BH Wulff, Cristobal Uauy

Publikováno v: eLife, Vol 9 (2020)

Understanding the function of genes within staple crops will accelerate crop improvement by allowing targeted breeding approaches. Despite their importance, a lack of genomic information and resources has hindered the functional characterisation of g

Externí odkaz: https://doaj.org/article/109e6ba31f8a424f886686b500930153

Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de bruijn graphs.

Autor: Richard M Leggett, Ricardo H Ramirez-Gonzalez, Walter Verweij, Cintia G Kawashima, Zamin Iqbal, Jonathan D G Jones, Mario Caccamo, Daniel Maclean

Publikováno v: PLoS ONE, Vol 8, Iss 3, p e60058 (2013)

Single Nucleotide Polymorphisms are invaluable markers for tracing the genetic basis of inheritable traits and the ability to create marker libraries quickly is vital for timely identification of target genes. Next-generation sequencing makes it poss

Externí odkaz: https://doaj.org/article/ffe763b8f7e34d909dfad1590c2ff99e

Multiple wheat genomes reveal global variation in modern breeding

Autor: Gonzalo Garcia Accinelli, Simon G. Krattinger, Luca Venturini, Fuminori Kobayashi, Allen K. Fritz, Emily Delorean, Hikmet Budak, Gabriel Keeble-Gagnère, Keith A. Gardner, Valentyna Klymiuk, Pierre Hucl, Ksenia V. Krasileva, Kanako Kawaura, Jianzhong Wu, Neil McKenzie, Bernardo J. Clavijo, Kirby T. Nilsen, Heidrun Gundlach, Sateesh Kagale, Sylvie Cloutier, Cristobal Uauy, Manuel Spannagl, Masaomi Hatakeyama, Juan J. Gutierrez-Gonzalez, Anne Fiebig, Tony Kuo, Erik Legg, Gwyneth Halstead-Nussloch, Michael W. Bevan, Jonathan M. Wright, Jennifer Ens, David Swarbreck, Jasline Deek, Jemima Brinton, Sudharsan Padmarasu, Venkat Bandi, Christine Fosker, Hiroyuki Kanamori, Josquin Tibbets, Nils Stein, James Cockram, Rie Shimizu-Inatsugi, Anthony Hall, Philomin Juliana, Curtis J. Pozniak, Yusuke Nabeka, Beat Keller, Timothy Paape, Sean Walkowiak, Pierre R. Fobert, Lawrence Percival-Alwyn, Curt A. McCartney, Gary J. Muehlbauer, Kenneth J. Chalmers, Shuhei Nasuda, Burkhard Steuernagel, Dinushika Thambugala, Ricardo H. Ramirez-Gonzalez, Krystalee Wiebe, Ian Small, Klaus F. X. Mayer, Toshiaki Tameshige, Cécile Monat, Darren Heavens, Jun Sese, Andrew G. Sharpe, Ravi P. Singh, Matthew D. Clark, Alejandro C. Costamagna, Axel Himmelbach, Hirokazu Handa, Mulualem T. Kassa, Carl Gutwin, Bin Xiao Fu, Catharine Aquino, Uwe Scholz, Georg Haberer, Tomohiro Ban, Joanna Melonek, Amidou N’Diaye, Dario Copetti, Kazuki Murata, Assaf Distelfeld, Liangliang Gao, Nick Fradgley, Markus C. Kolodziej, Jorge Nunez Siri, Arvind K. Bharti, Thomas Wicker, Brook Byrns, Dal-Hoe Koo, Tsuyoshi Tanaka, Hiroyuki Tsuji, Peter Langridge, Chu Shin Koh, Kentaro Shimizu, Jesse Poland, Martin Mascher

Publikováno v: Nature
Nature, vol 588, iss 7837

Advances in genomics have expedited the improvement of several agriculturally important crops but similar efforts in wheat (Triticum spp.) have been more challenging. This is largely owing to the size and complexity of the wheat genome1, and the lack

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3253b3a6d2673fc15aed4823ff1e636f
http://hdl.handle.net/2433/259345

Wheat in vivo RNA structure landscape reveals a prevalent role of RNA structure in modulating translational subgenome expression asymmetry

Autor: Ricardo H. Ramirez-Gonzalez, Bao Liu, Wenqing Sun, Ling Ding, Xiaofei Yang, Fei Lu, Ji Li, Cristobal Uauy, Xuebo Zhao, Jitender Cheema, Haopeng Yu, Azahara C. Martín, Yiliang Ding, Huakun Zhang

Publikováno v: Genome Biology
Genome Biology, Vol 22, Iss 1, Pp 1-26 (2021)

BackgroundPolyploidy, especially allopolyploidy, which entails merging divergent genomes via hybridization and whole-genome duplication (WGD), is a major route to speciation in plants. The duplication among the parental genomes (subgenomes) often lea

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dc580872a9c615ac33164b9d62de6761
https://pubmed.ncbi.nlm.nih.gov/34847934

Rust expression browser: an open source database for simultaneous analysis of host and pathogen gene expression profiles with expVIP

Autor: Udi Meidan, Ricardo H. Ramirez-Gonzalez, Tjelvar S. G. Olsson, Jacob Lage, Radivoje Jevtić, Colin Patrick, Matthew Kerton, Ruth Bryant, Diane G. O. Saunders, Charlotte Hayes, Pablo Eduardo Campos, Rosie Bryson, Christine Lilly, Ruth Wanyera, Dario Novoselović, Clare M. Lewis, Thomas M. Adams, David Feuerhelm, Amelia Hubbard, Tina Henriksson, Christopher Judge, Paul Fenwick

Publikováno v: BMC Genomics
BMC Genomics 22 : Article number: 166 (2021)
INTA Digital (INTA)
Instituto Nacional de Tecnología Agropecuaria
instacron:INTA
BMC Genomics, Vol 22, Iss 1, Pp 1-10 (2021)

Transcriptomics is being increasingly applied to generate new insight into the interactions between plants and their pathogens. For the wheat yellow (stripe) rust pathogen (Puccinia striiformis f. sp. tritici, Pst) RNA-based sequencing (RNA-Seq) has

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c63f42a56e68297ef23c0216bf3a34a9
https://pubmed.ncbi.nlm.nih.gov/33750297