Zobrazeno 1 - 10
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pro vyhledávání: '"Repchevsky, Dmitry"'
Akademický článek
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Autor:
Nevers, Yannis, Jones, Tamsin, Jyothi, Dushyanth, Yates, Bethan, Ferret, Meritxell, Portell-Silva, Laura, Codo, Laia, Cosentino, Salvatore, Marcet-Houben, Marina, Vlasova, Anna, Poidevin, Laetitia, Kress, Arnaud, Hickman, Mark, Persson, Emma, Piližota, Ivana, Guijarro-Clarke, Cristina, Altenhoff, Adrian, Bruford, Elspeth, Dessimoz, Christophe, Ebersberger, Ingo, Emms, David, Gabaldón, Toni, Glover, Natasha, Hu, Yanhui, Iwasaki, Wataru, Lecompte, Odile, Linard, Benjamin, Martin, Maria, Roos, David, Sonhammer, Erik, Thomas, Paul, Thybert, David, Vandepoele, Klaas, Capella-Gutierrez, Salvador, Codó, Laia, Gonzalez-Uriarte, Asier, Garrayo-Ventas, Javier, Repchevsky, Dmitry, Sundesha, Vicky, Sonnhammer, Erik
Publikováno v:
Nucleic Acids Research
Nucleic Acids Research, 2022, 50 (W1), pp.W623-W632. ⟨10.1093/nar/gkac330⟩
Nucleic Acids Research, 2022, 50 (W1), pp.W623-W632. ⟨10.1093/nar/gkac330⟩
International audience; The Orthology Benchmark Service (https://orthology.benchmarkservice.org) is the gold standard for orthology inference evaluation, supported and maintained by the Quest for Orthologs consortium. It is an essential resource to c
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______165::c0ef7edea95c1e5e3d95e611576fc0c6
https://hal.science/hal-04102295/file/gkac330.pdf
https://hal.science/hal-04102295/file/gkac330.pdf
Autor:
Modic, Jolanda, Capella-Gutiérrez, Salvador, Canosa, Alejandro, Repchevsky, Dmitry, Haziza, Frederic, Ariosa, Roberto, Fernández, José María, Codó, Laia, Trajbarič, Mihael, Štepec, Dejan, Faura, Alvaro Garcia
We report on the selection of the appropriate data models to handle the available data and metadata to the iPC Central Computational and Data platform. We also report on the current status of the development for the iPC Data portal.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e936f8ef70667406437466d029cc28c7
Autor:
Capella-Gutierrez, Salvador, Canosa, Alejandro, De La Calle, Elena, Codo, Laia, Repchevsky, Dmitry, Fernández, José María, Valencia, Alfonso, Modic, Jolanda, Černivec, Aleš
This is the accepted iPC deliverable D2.3 „Recommended metadata standards and portal prototype“. The iPC project aims to ensure interoperability of data between different resources, so the platform must enforce principles and well-defined standar
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::18e312203aa7a17666f938c235e62cf2
Akademický článek
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Autor:
Repchevsky, Dmitry, Naro, Daniel, Royo, Romina, Llorente Viejo, Silvia, Delgado Mercè, Jaime, Gelpi, Josep Lluis
Publikováno v:
UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)
Recercat. Dipósit de la Recerca de Catalunya
instname
Universitat Politècnica de Catalunya (UPC)
Recercat. Dipósit de la Recerca de Catalunya
instname
jmpegg library provides MPEG-G files encoding/decoding features. The library is written in a pure java language without external dependencies. The library also supports conversion between MPEG-G and well-known genomic formats. High-throughput sequenc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::affe83c09fe41236405c225c0df473d9
https://hdl.handle.net/2117/168998
https://hdl.handle.net/2117/168998
Autor:
Repchevsky, Dmitry1, Gelpi, Josep Ll.1,2 gelpi@ub.edu
Publikováno v:
PLoS ONE. Sep2014, Vol. 9 Issue 9, p1-5. 5p.
Autor:
Capella-Gutierrez, Salvador, de la Iglesia, Diana, Haas, Juergen, Lourenco, Analia, Fernandez, José M., Repchevsky, Dmitry, Dessimoz, Christophe, Schwede, Torsten, Notredame, Cedric, Gelpí, Josep Lluís, Valencia, Alfonso
Publikováno v:
UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)
Recercat. Dipósit de la Recerca de Catalunya
instname
Universitat Politècnica de Catalunya (UPC)
Recercat. Dipósit de la Recerca de Catalunya
instname
The dependence of life scientists on software has steadily grown in recent years. For many tasks, researchers have to decide which of the available bioinformatics software are more suitable for their specific needs. Additionally researchers should be
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::d974dcf7bbad94ee1a790e0553b63416
http://hdl.handle.net/2117/107279
http://hdl.handle.net/2117/107279
Akademický článek
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Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.
Autor:
Pardo-Palacios FJ; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain.; These authors contributed equally to this work., Wang D; Department of Biomedical Informatics, The Ohio State University, Columbus, USA.; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA.; These authors contributed equally to this work., Reese F; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA.; These authors contributed equally to this work., Diekhans M; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, USA.; These authors contributed equally to this work., Carbonell-Sala S; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Catalonia, Spain.; These authors contributed equally to this work., Williams B; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, USA.; These authors contributed equally to this work., Loveland JE; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.; These authors contributed equally to this work., De María M; Department of Physiological Sciences, College of Veterinary Medicine, University of Florida, Gainesville, USA.; Center for Environmental and Human Toxicology, University of Florida, Gainesville, USA.; These authors contributed equally to this work., Adams MS; Molecular Cell and Developmental Biology, University of California, Santa Cruz, Santa Cruz, USA.; These authors contributed equally to this work., Balderrama-Gutierrez G; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA.; These authors contributed equally to this work., Behera AK; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA.; These authors contributed equally to this work., Gonzalez JM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.; These authors contributed equally to this work., Hunt T; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.; These authors contributed equally to this work., Lagarde J; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Catalonia, Spain.; Flomics Biotech, Dr Aiguader 88, Barcelona 08003, Spain.; These authors contributed equally to this work., Liang CE; Molecular Cell and Developmental Biology, University of California, Santa Cruz, Santa Cruz, USA.; These authors contributed equally to this work., Li H; Department of Biomedical Informatics, The Ohio State University, Columbus, USA.; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA.; These authors contributed equally to this work., Jerryd Meade M; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, USA.; These authors contributed equally to this work., Moraga Amador DA; Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, USA.; These authors contributed equally to this work., Prjibelski AD; Department of Computer Science, University of Helsinki, Helsinki, Finland.; Center for Bioinformatics and Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia.; These authors contributed equally to this work., Birol I; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, Canada., Bostan H; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Durham, USA., Brooks AM; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Durham, USA., Hasan Çelik M; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA., Chen Y; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore., Du MRM; Walter and Eliza Hall Institute of Medical Research, Parkville, Australia., Felton C; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA., Göke J; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.; Department of Statistics and Data Science, National University of Singapore, Singapore, Singapore., Hafezqorani S; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, Canada., Herwig R; Department Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Berlin, Germany., Kawaji H; Research Center for Genome & Medical Sciences, Tokyo Metropolitan Institute of Medical Science, Tokyo, Japan., Lee J; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore., Liang Li J; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Durham, USA., Lienhard M; Department Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Berlin, Germany., Mikheenko A; Department of Neuromuscular Diseases, UCL Queen Square Institute of Neurology, London, UK., Mulligan D; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA., Ming Nip K; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, Canada., Pertea M; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, USA.; Center for Computational Biology, Johns Hopkins University, Baltimore, USA., Ritchie ME; Walter and Eliza Hall Institute of Medical Research, Parkville, Australia.; Department of Medical Biology, The University of Melbourne, Parkville, Australia., Sim AD; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore., Tang AD; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA., Kei Wan Y; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.; Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore., Wang C; Walter and Eliza Hall Institute of Medical Research, Parkville, Australia., Wong BY; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, USA.; Center for Computational Biology, Johns Hopkins University, Baltimore, USA., Yang C; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, Canada., Barnes I; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Berry A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Capella S; Barcelona Supercomputing Cente, Barcelona, Spain., Dhillon N; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA., Fernandez-Gonzalez JM; Barcelona Supercomputing Cente, Barcelona, Spain., Ferrández-Peral L; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain., Garcia-Reyero N; Environmental Laboratory, US Army Engineer Research & Development Center, Vicksburg, USA., Goetz S; Biobam Bioinformatics SL, Valencia, Spain., Hernández-Ferrer C; Barcelona Supercomputing Cente, Barcelona, Spain., Kondratova L; Genetics Institute, University of Florida, Gainesville, USA., Liu T; Cardiff University, Cardiff, UK., Martinez-Martin A; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain., Menor C; Biobam Bioinformatics SL, Valencia, Spain., Mestre-Tomás J; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain., Mudge JM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Panayotova NG; Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, USA., Paniagua A; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain., Repchevsky D; Barcelona Supercomputing Cente, Barcelona, Spain., Rouchka E; Department of Biochemistry & Molecular Genetics, University of Louisville, Louisville, USA., Saint-John B; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA., Sapena E; European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK, UK., Sheynkman L; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, USA., Laird Smith M; Department of Biochemistry & Molecular Genetics, University of Louisville, Louisville, USA., Suner MM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Takahashi H; Center for Integrative Medical Sciences, Laboratory for Transcriptome Technology, RIKEN, Yokohama, Japan., Youngworth IA; Department of Genetics, Stanford University, Palo Alto, USA., Carninci P; Center for Integrative Medical Sciences, Laboratory for Transcriptome Technology, RIKEN, Yokohama, Japan.; Human Technopole, Milano, Italy., Denslow ND; Department of Physiological Sciences, College of Veterinary Medicine, University of Florida, Gainesville, USA.; Center for Environmental and Human Toxicology, Department of Physiological Sciences,, University of Florida, Gainesville, USA., Guigó R; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Catalonia, Spain.; Universitat Pompeu Fabra (UPF), Barcelona, Catalonia, Spain., Hunter ME; U.S. Geological Survey, Wetland and Aquatic Research Center, Gainesville, USA., Tilgner HU; Brain and Mind Research Institute and Center for Neurogenetics, Weill Cornell Medicine, New York City, USA., Wold BJ; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, USA., Vollmers C; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA., Frankish A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Fai Au K; Department of Biomedical Informatics, The Ohio State University, Columbus, USA.; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA., Sheynkman GM; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, USA.; Center for Public Health Genomics.; UVA Cancer Center, University of Virginia, Charlottesville, USA., Mortazavi A; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA., Conesa A; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain.; Microbiology and Cell Science Department, Institute for Food and Agricultural Sciences, University of Florida, Gainesville, USA., Brooks AN; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, USA.; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA.
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2023 Jul 27. Date of Electronic Publication: 2023 Jul 27.