Zobrazeno 1 - 10
of 48
pro vyhledávání: '"Renfrew, PD"'
Autor:
Kortemme, Tanja, Lyskov, S, Chou, FC, Conchúir, SO, Der, BS, Drew, K, Kuroda, D, Xu, J, Weitzner, BD, Renfrew, PD, Sripakdeevong, P
Publikováno v:
Kortemme, Tanja; Lyskov, S; Chou, FC; Conchúir, SO; Der, BS; Drew, K; et al.(2013). Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE). UC San Francisco: Retrieved from: http://www.escholarship.org/uc/item/5pn6h136
The Rosetta molecular modeling software package provides experimentally tested and rapidly evolving tools for the 3D structure prediction and high-resolution design of proteins, nucleic acids, and a growing number of non-natural polymers. Despite its
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______325::1986045e1f933fd91c8984c939ef2314
http://www.escholarship.org/uc/item/5pn6h136
http://www.escholarship.org/uc/item/5pn6h136
Autor:
Wang AL; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, NY 11201, USA; Department of Biomedical Engineering, State University of New York (SUNY) Downstate Health Sciences University, Brooklyn, NY 11203, USA., Mishkit O; Center for Advanced Imaging Innovation and Research (CAI2R), New York University Grossman School of Medicine, New York, NY 10016, USA; Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University Grossman School of Medicine, New York, NY 10016, USA., Mao H; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, NY 11201, USA., Arivazhagan L; Diabetes Research Group, Department of Medicine, New York University Grossman School of Medicine, USA., Dong T; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, NY 11201, USA., Lee F; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, NY 11201, USA., Bhattacharya A; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, NY 11201, USA; Department of Cell Biology, State University of New York (SUNY) Downstate Health Sciences University, Brooklyn, NY 11203, USA., Renfrew PD; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY 10010, USA., Schmidt AM; Diabetes Research Group, Department of Medicine, New York University Grossman School of Medicine, USA., Wadghiri YZ; Center for Advanced Imaging Innovation and Research (CAI2R), New York University Grossman School of Medicine, New York, NY 10016, USA; Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University Grossman School of Medicine, New York, NY 10016, USA., Fisher EA; Leon H. Charney Division of Cardiology and Cardiovascular Research Center, Department of Medicine, New York University Grossman School of Medicine, New York, NY 10016, USA., Montclare JK; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, NY 11201, USA; Department of Biomedical Engineering, New York University Tandon School of Engineering, Brooklyn, NY 11201, USA; Department of Chemistry, New York University, New York, NY 10012, USA; Department of Biomaterials, New York University College of Dentistry, New York, NY 10010, USA. Electronic address: montclare@nyu.edu.
Publikováno v:
Acta biomaterialia [Acta Biomater] 2024 Oct 01; Vol. 187, pp. 291-303. Date of Electronic Publication: 2024 Sep 03.
Autor:
Sun JW; Department of Chemistry, New York University, New York, New York, USA.; Department of Chemical and Biomolecular Engineering, NYU Tandon School of Engineering, Brooklyn, New York, USA., Thomas JS; Department of Chemical and Biomolecular Engineering, NYU Tandon School of Engineering, Brooklyn, New York, USA.; Department of Biomedical Engineering, NYU Tandon School of Engineering, Brooklyn, New York, USA., Monkovic JM; Department of Chemical and Biomolecular Engineering, NYU Tandon School of Engineering, Brooklyn, New York, USA., Gibson H; Department of Chemical and Biomolecular Engineering, NYU Tandon School of Engineering, Brooklyn, New York, USA., Nagapurkar A; Department of Chemical and Biomolecular Engineering, NYU Tandon School of Engineering, Brooklyn, New York, USA., Frezzo JA; Department of Chemical and Biomolecular Engineering, NYU Tandon School of Engineering, Brooklyn, New York, USA., Katyal P; Department of Chemical and Biomolecular Engineering, NYU Tandon School of Engineering, Brooklyn, New York, USA., Punia K; Department of Chemical and Biomolecular Engineering, NYU Tandon School of Engineering, Brooklyn, New York, USA., Mahmoudinobar F; Department of Chemical and Biomolecular Engineering, NYU Tandon School of Engineering, Brooklyn, New York, USA.; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, New York, USA., Renfrew PD; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, New York, USA., Montclare JK; Department of Chemistry, New York University, New York, New York, USA.; Department of Chemical and Biomolecular Engineering, NYU Tandon School of Engineering, Brooklyn, New York, USA.; Department of Radiology, NYU Grossman School of Medicine, New York, New York, USA.; Department of Biomaterials, NYU College of Dentistry, New York, New York, USA.
Publikováno v:
Journal of peptide science : an official publication of the European Peptide Society [J Pept Sci] 2024 Aug; Vol. 30 (8), pp. e3594. Date of Electronic Publication: 2024 Mar 18.
Autor:
Kronenberg J; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York, United States., Chu S; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York, United States., Olsen A; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York, United States., Britton D; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York, United States., Halvorsen L; Center for Genomics and Systems Biology, New York University, New York, New York, United States.; Center for Computational Biology, Flatiron Institute, New York, New York, United States., Guo S; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York, United States., Lakshmi A; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York, United States., Chen J; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York, United States., Kulapurathazhe MJ; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York, United States., Baker CA; Medical Toxicology Research Division, U.S. Army Medical Research Institute of Chemical Defense, Aberdeen Proving Ground, Maryland, United States., Wadsworth BC; Medical Toxicology Research Division, U.S. Army Medical Research Institute of Chemical Defense, Aberdeen Proving Ground, Maryland, United States., Van Acker CJ; Medical Toxicology Research Division, U.S. Army Medical Research Institute of Chemical Defense, Aberdeen Proving Ground, Maryland, United States., Lehman JG 3rd; Medical Toxicology Research Division, U.S. Army Medical Research Institute of Chemical Defense, Aberdeen Proving Ground, Maryland, United States., Otto TC; Medical Toxicology Research Division, U.S. Army Medical Research Institute of Chemical Defense, Aberdeen Proving Ground, Maryland, United States., Renfrew PD; Center for Genomics and Systems Biology, New York University, New York, New York, United States.; Center for Computational Biology, Flatiron Institute, New York, New York, United States., Bonneau R; Center for Genomics and Systems Biology, New York University, New York, New York, United States.; Center for Computational Biology, Flatiron Institute, New York, New York, United States., Montclare JK; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York, United States.; Department of Biomaterials, New York University College of Dentistry, New York, New York, United States.; Department of Radiology, New York University Grossman School of Medicine, New York, New York, United States.; Department of Biomedical Engineering, New York University Tandon School of Engineering, Brooklyn, New York, United States.; Department of Chemistry, New York University, New York, New York, United States.
Publikováno v:
ChemistryOpen [ChemistryOpen] 2024 Jul; Vol. 13 (7), pp. e202300263. Date of Electronic Publication: 2024 Mar 01.
Autor:
Britton D, Christians LF, Liu C, Legocki J, Xiao Y, Meleties M, Yang L, Cammer M, Jia S, Zhang Z, Mahmoudinobar F, Kowalski Z, Renfrew PD, Bonneau R, Pochan DJ, Pak AJ, Montclare JK
Publikováno v:
Biomacromolecules [Biomacromolecules] 2024 May 13; Vol. 25 (5), pp. 3214. Date of Electronic Publication: 2024 Apr 17.
Autor:
Britton D; 1Department of Chemical and Biomolecular Engineering, Tandon School of Engineering, New York University, Brooklyn, New York, USA; email: montclare@nyu.edu., Sun JW; 1Department of Chemical and Biomolecular Engineering, Tandon School of Engineering, New York University, Brooklyn, New York, USA; email: montclare@nyu.edu.; 2Department of Chemistry, New York University, New York, NY, USA., Renfrew PD; 3Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA., Montclare JK; 1Department of Chemical and Biomolecular Engineering, Tandon School of Engineering, New York University, Brooklyn, New York, USA; email: montclare@nyu.edu.; 2Department of Chemistry, New York University, New York, NY, USA.; 4Department of Biomedical Engineering, Tandon School of Engineering, New York University, Brooklyn, New York, USA.; 5Department of Radiology, School of Medicine, New York University, New York, NY, USA.; 6Department of Biomaterials, College of Dentistry, New York University, New York, NY, USA.
Publikováno v:
Annual review of chemical and biomolecular engineering [Annu Rev Chem Biomol Eng] 2024 Apr 10. Date of Electronic Publication: 2024 Apr 10.
Scaffold Matcher: A CMA-ES based algorithm for identifying hotspot aligned peptidomimetic scaffolds.
Autor:
Claussen ER; Department of Biological Sciences, University of Illinois at Chicago, Chicago, Illinois, USA., Renfrew PD; Center for Computational Biology, Flatiron Institute, New York, New York, USA., Müller CL; Department of Statistics, Ludwig-Maximilians-Universität München, Munich, Germany.; Institute of Computational Biology, Helmholtz Zentrum München, Munich, Germany.; Center for Computational Mathematics, Flatiron Institute, New York, New York, USA., Drew K; Department of Biological Sciences, University of Illinois at Chicago, Chicago, Illinois, USA.
Publikováno v:
Proteins [Proteins] 2024 Mar; Vol. 92 (3), pp. 343-355. Date of Electronic Publication: 2023 Oct 24.
Autor:
Kronenberg J; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA., Britton D; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA., Halvorsen L; Center for Genomics and Systems Biology, New York University, New York, New York 10003, USA., Chu S; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA., Kulapurathazhe MJ; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA., Chen J; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA., Lakshmi A; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA., Renfrew PD; Center for Genomics and Systems Biology, New York University, New York, New York 10003, USA., Bonneau R; Center for Genomics and Systems Biology, New York University, New York, New York 10003, USA.; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, New York 10010, USA.; Courant Institute of Mathematical Sciences, Computer Science Department, New York University, New York, New York 10009, USA., Montclare JK; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA.; Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, New York 10016, USA.; Department of Chemistry, New York University, New York, New York 10012, USA.; Department of Biomaterials, New York University College of Dentistry, New York, New York 10010, USA.; Department of Biomedical Engineering, New York University, New York, NY 11201, USA.
Publikováno v:
Protein engineering, design & selection : PEDS [Protein Eng Des Sel] 2024 Jan 29; Vol. 37.
Autor:
Britton D; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, United States., Christians LF; Department of Chemical and Biological Engineering, Colorado School of Mines, Golden, Colorado 80401, United States., Liu C; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, United States., Legocki J; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, United States., Xiao Y; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, United States., Meleties M; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, United States., Yang L; National Synchrotron Light Source-II, Brookhaven National Laboratory, Upton, New York 11973, United States., Cammer M; Microscopy Laboratory, New York University Langone Health, New York, New York 10016, United States., Jia S; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, United States., Zhang Z; Department of Materials Science and Engineering, University of Delaware, Newark, Delaware 19716, United States., Mahmoudinobar F; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, United States.; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, New York 10010, United States., Kowalski Z; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, United States., Renfrew PD; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, United States., Bonneau R; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, United States.; Center for Genomics and Systems Biology, New York University, New York, New York 10003, United States.; Courant Institute of Mathematical Sciences, Computer Science Department, New York University, New York, New York 10009, United States., Pochan DJ; Department of Materials Science and Engineering, University of Delaware, Newark, Delaware 19716, United States., Pak AJ; Department of Chemical and Biological Engineering, Colorado School of Mines, Golden, Colorado 80401, United States.; Quantitative Biosciences and Engineering, Colorado School of Mines, Golden, Colorado 80401, United States., Montclare JK; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, United States.; Department of Chemistry, New York University, New York, New York 10012, United States.; Department of Biomedical Engineering, New York University, New York, New York 11201, United States.; Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, New York 10016, United States.; Department of Biomaterials, New York University College of Dentistry, New York, New York 10010, United States.
Publikováno v:
Biomacromolecules [Biomacromolecules] 2024 Jan 08; Vol. 25 (1), pp. 258-271. Date of Electronic Publication: 2023 Dec 18.
Autor:
Britton D; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, United States., Legocki J; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, United States., Aristizabal O; Center for Advanced Imaging Innovation and Research (CAI2R), New York University School of Medicine, New York, New York 10016, United States.; Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, New York 10016, United States., Mishkit O; Center for Advanced Imaging Innovation and Research (CAI2R), New York University School of Medicine, New York, New York 10016, United States.; Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, New York 10016, United States., Liu C; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, United States., Jia S; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, United States., Renfrew PD; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, New York 10010, United States., Bonneau R; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, New York 10010, United States.; Center for Genomics and Systems Biology, New York University, New York, New York 10003, United States.; Courant Institute of Mathematical Sciences, Computer Science Department, New York University, New York, New York 10009, United States., Wadghiri YZ; Center for Advanced Imaging Innovation and Research (CAI2R), New York University School of Medicine, New York, New York 10016, United States.; Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, New York 10016, United States., Montclare JK; Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, United States.; Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, New York 10016, United States.; Department of Chemistry, New York University, New York, New York 10012, United States.; Department of Biomaterials, New York University College of Dentistry, New York, New York 10010, United States.
Publikováno v:
ACS applied nano materials [ACS Appl Nano Mater] 2023 Nov 06; Vol. 6 (22), pp. 21245-21257. Date of Electronic Publication: 2023 Nov 06 (Print Publication: 2023).