Collembase: a repository for springtail genomics and soil quality assessment

Autor: Dick Roelofs, Janine Mariën, Muriel E de Boer, Tjalf E. de Boer, Rene M Klein-Lankhorst, Benjamin Nota, Nico M. van Straalen, M.J.T.N. Timmermans

Publikováno v: BMC Genomics, 8:341, 1-10. BioMed Central
Timmermans, M J T N, de Boer, M E, Nota, B, de Boer, T E, Mariën, A G H, Klein-Lankhorst, R M, van Straalen, N M & Roelofs, D 2007, ' Collembase: a repository for springtail genomics and soil quality assessment ', BMC Genomics, vol. 8, 341, pp. 1-10 . https://doi.org/10.1186/1471-2164-8-341
BMC Genomics
BMC Genomics, Vol 8, Iss 1, p 341 (2007)
BMC Genomics 8 (2007)
BMC Genomics, 8

Background Environmental quality assessment is traditionally based on responses of reproduction and survival of indicator organisms. For soil assessment the springtail Folsomia candida (Collembola) is an accepted standard test organism. We argue that

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https://research.vu.nl/en/publications/c4aa0208-e4fe-473d-a7ba-9fce5dfb261e

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The tomato genome sequence provides insights into fleshy fruit evolution

Autor: Sato, Shusei, Tabata, Satoshi, Hirakawa, Hideki, Asamizu, Erika, Shirasawa, Kenta, Isobe, Sachiko, Kaneko, Takakazu, Nakamura, Yasukazu, Shibata, Daisuke, Aoki, Koh, Egholm, Michael, Knight, James, Bogden, Robert, Changbao, Shuang, Yang, Xun, Pan, Shengkai, Cheng, Shifeng, Liu, Xin, Ren, Yuanyuan, Wang, Jun, Albiero, Alessandro, Dal Pero, Francesca, Todesco, Sara, Van Eck, Joyce, Buels, Robert M., Bombarely, Aureliano, Gosselin, Joseph R., Huang, Minyun, Leto, Jonathan A., Menda, Naama, Strickler, Susan, Mao, Linyong, Gao, Shan, Tecle, Isaak Y., York, Thomas, Zheng, Vrebalov, Julia T., Lee, JeMin, Zhong, Silin, Mueller, Lukas A., Stiekema, Willem J., Ribeca, Paolo, Alioto, Tyler, Wencai, Sanwen, Yongchen, Zhang, Zhonghua, Jianchang, Guo, Yanmei, Xiaoxuan, Ying, Chuanyou, Zhukuan, Zuo, Jianru, Jianfeng, Zhao, Jiuhai, Yan, Liuhua, Jiang, Hongling, Bao, Hongshuang, Zhenjun, Fuyou, Chen, Bingtang, Han, Bin, Feng, Fan, Danlin, Ling, Hongqing, Xue, Yongbiao, Ware, Doreen, McCombie, W. Richard, Lippman, Zachary B., Chia, Jer-Ming, Pasternak, Shiran, Gelley, Laura, Kramer, Melissa, Anderson, Lorinda K., Chang, Song-Bin, Royer, Suzanne M., Shearer, Lindsay A., Stack, Stephen M., Rose, Jocelyn K. C., Yimin, Eannetta, Nancy, Matas, Antonio J., McQuinn, Ryan, Tanksley, Steven D., Camara, Francisco, Guigo, Roderic, Rombauts, Stephane, Fawcett, Jeffrey, Van de Peer, Yves, Zamir, Dani, Liang, Chunbo, Spannagl, Manuel, Gundlach, Heidrun, Bruggmann, Remy, Mayer, Klaus, Jia, Zhiqi, Junhong, Zhibiao, Bishop, Gerard J., Butcher, Sarah, Lopez-Cobollo, Rosa, Buchan, Daniel, Filippis, Ioannis, Abbott, Dixit, Rekha, Singh, Manju, Archana, Pal, Jitendra Kumar, Pandit, Awadhesh, Pradeep Kumar, Mahato, Ajay Kumar, Dogra, Vivek, Gaikwad, Kishor, Sharma, Tilak Raj, Mohapatra, Trilochan, Nagendra Kumar, Causse, Mathilde, Rothan, Christophe, Schiex, Noirot, Celine, Bellec, Arnaud, Klopp, Delalande, Corinne, Berges, Helene, Mariette, Jerome, Frasse, Pierre, Vautrin, Sonia, Zouine, Mohamed, Latche, Alain, Rousseau, Christine, Regad, Farid, Pech, Jean-Claude, Philippot, Murielle, Bouzayen, Mondher, Pericard, Osorio, Fernandez del Carmen, Asuncion, Monforte, Antonio, Granell, Fernandez-Munoz, Rafael, Conte, Mariana, Lichtenstein, Gabriel, Carrari, Fernando, De Bellis, Gianluca, Fuligni, Fabio, Peano, Clelia, Grandillo, Silvana, Termolino, Pasquale, Pietrella, Marco, Fantini, Elio, Falcone, Giulia, Fiore, Alessia, Giuliano, Giovanni, Lopez, Loredana, Facella, Perrotta, Gaetano, Daddiego, Loretta, Bryan, Glenn, Orozco, Modesto, Pastor, Xavier, Torrents, David, van Schriek, Keygene N. V. Marco G. M., Feron, Richard M. C., van Oeveren, Jan, de Heer, Peter, daPonte, Lorena, Jacobs-Oomen, Saskia, Cariaso, Mike, Prins, Marcel, van Eijk, Michiel J. T., Janssen, Antoine, van Haaren, Mark J. J., Sung-Hwan, Kim, Jungeun, Kwon, Suk-Yoon, Sangmi, Koo, Dal-Hoe, Sanghyeob, Hur, Cheol-Goo, Clouser, Christopher, Rico, Hallab, Asis, Gebhardt, Christiane, Klee, Kathrin, Joecker, Anika, Warfsmann, Jens, Goebel, Ulrike, Kawamura, Shingo, Yano, Kentaro, Sherman, Jamie D., Fukuoka, Hiroyuki, Negoro, Satomi, Bhutty, Sarita, Chowdhury, Parul, Chattopadhyay, Debasis, Datema, Erwin, Smit, Sandra, Schijlen, Eliog. W. M., van de Belt, Jose, van Haarst, Jan C., Peters, Sander A., van Staveren, Marjo J., Henkens, Marleen H. C., Mooyman, Paul J. W., Hesselink, Thamara, van Ham, Roeland C. H. J., Guoyong, Droege, Marcus, Choi, Doil, Kang, Byung-Cheol, Byung Dong, Park, Minkyu, Seungill, Yeom, Seon-In, Yong-Hwan, Yang-Do, Guangcun, Jianwei, Yongsheng, Shengxiong, Fernandez-Pedrosa, Victoria, Collado, Carmen, Zuniga, Sheila, Guoping, Cade, Rebecca, Dietrich, Robert A., Rogers, Jane, Knapp, Fei, Zhangjun, White, Ruth A., Thannhauser, Theodore W., Giovannoni, James J., Angel Botella, Miguel, Gilbert, Louise, Gonzalez, Ramon, Goicoechea, Jose Luis, Yeisoo, Kudrna, Collura, Kristi, Wissotski, Marina, Wing, Rod, Schoof, Heiko, Meyers, Blake C., Gurazada, Aishwarya Bala, Green, Pamela J., Mathur, Saloni, Vyas, Shailendra, Solanke, Amolkumar U., Kumar, Rahul, Gupta, Vikrant, Arun K., Khurana, Paramjit, Jitendra P., Tyagi, Akhilesh K., Dalmay, Tamas, Mohorianu, Irina, Walts, Brandon, Chamala, Srikar, Barbazuk, W. Brad, Jingping, Hui, Tae-Ho, Yupeng, Dong, Paterson, Andrew H., Xiyin, Tang, Haibao, Barone, Amalia, Chiusano, Maria Luisa, Ercolano, Maria Raffaella, D'Agostino, Nunzio, Di Filippo, Miriam, Traini, Alessandra, Sanseverino, Walter, Frusciante, Luigi, Seymour, Graham B., Elharam, Mounir, Hua, Axin, Kenton, Steven, Lewis, Jennifer, Lin, Shaoping, Najar, Fares, Lai, Hongshing, Qin, Baifang, Chunmei, Shi, Ruihua, Douglas, Xing, Yanbo, Keqin, Jing, Yao, Ziyun, Zhou, Liping, Roe, Bruce A., Vezzi, D'Angelo, Michela, Zimbello, Rosanna, Schiavon, Riccardo, Caniato, Elisa, Rigobello, Chiara, Campagna, Davide, Vitulo, Nicola, Valle, Giorgio, Nelson, David R., De Paoli, Emanuele, Szinay, Dora, de Jong, Hans H., Bai, Yuling, Visser, Richard G. F., Lankhorst, Rene M. Klein, Beasley, Helen, McLaren, Karen, Nicholson, Riddle, Claire, Gianese, Giulio, Tomato Genome Consortium

Publikováno v: Recercat. Dipósit de la Recerca de Catalunya
instname
Nature 485 (2012)
Nature
Nature (Lond.) 485 (2012): 635–641. doi:10.1038/nature11119
info:cnr-pdr/source/autori:Sato S, Tabata S, Hirakawa H, Asamizu E, Shirasawa K, Isobe S, Kaneko T, Nakamura Y, Shibata D, Aoki K, Egholm M, Knight J, Bogden R, Li C, Shuang Y, Xu X, Pan S, Cheng S, Liu X, Ren Y, Wang J, Albiero A, Dal Pero F, Todesco S, Van Eck J, Buels RM, Bombarely A, Gosselin JR, Huang M, Leto JA, Menda N, Strickler S, Mao L, Gao S, Tecle IY, York T, Zheng Y, Vrebalov JT, Lee J, Zhong S, Mueller LA, Stiekema WJ, Ribeca P, Alioto T, Yang W, Huang S, Du Y, Zhang Z, Gao J, Guo Y, Wang X, Li Y, He J, Li C, Cheng Z, Zuo J, Ren J, Zhao J, Yan L, Jiang H, Wang B, Li H, Li Z, Fu F, Chen B, Feng Q, Fan D, Wang Y, Ling H, Xue Y, Ware D, McCombie WR, Lippman ZB, Chia JM, Jiang K, Pasternak S, Gelley L, Kramer M, Anderson LK, Chang SB, Royer SM, Shearer LA, Stack SM, Rose JK, Xu Y, Eannetta N, Matas AJ, McQuinn R, Tanksley SD, Camara F, Guigó R, Rombauts S, Fawcett J, Van de Peer Y, Zamir D, Liang C, Spannagl M, Gundlach H, Bruggmann R, Mayer K, Jia Z, Zhang J, Ye Z, Bishop GJ, Butcher S, Lopez-Cobollo R, Buchan D, Filippis I, Abbott J, Dixit R, Singh M, Singh A, Pal JK, Pandit A, Singh PK, Mahato AK, Gaikwad VD, Sharma RR, Mohapatra T, Singh NK, Causse M, Rothan C, Schiex T, Noirot C, Bellec A, Klopp C, Delalande C, Berges H, Mariette J, Frasse P, Vautrin S, Zouine M, Latché A, Rousseau C, Regad F, Pech JC, Philippot M, Bouzayen M, Pericard P, Osorio S, Fernandez del Carmen A, Monforte A, Granell A, Fernandez-Muñoz R, Conte M, Lichtenstein G, Carrari F, De Bellis G, Fuligni F, Peano C, Grandillo S, Termolino P, Pietrella M, Fantini E, Falcone G, Fiore A, Giuliano G, Lopez L, Facella P, Perotta G, Daddiego L, Bryan G, Orozco M, Pastor X, Torrents D, van Schriek MG, Feron RM, van Oeveren J, de Heer P, daPonte L, Jacobs-Oomen S, Cariaso M, Prins M, van Eijk MJ, Janssen A, van Haaren MJ, Jungeun Kim SH, Kwon SY, Kim S, Koo DH, Lee S, Hur CG, Clouser C, Rico A, Hallab A, Gebhardt C, Klee K, Jöcker A, Warfsmann J, Göbel U, Kawamura S, Yano K, Sherman JD, Fukuoka H, Negoro S, Bhutty S, Chowdhury P, Chattopadhyay D, Datema E, Smit S, Schijlen EG, van de Belt J, van Haarst JC, Peters SA, van Staveren MA, Henkens MH, Mooyman PJ, Hesselink T, van Ham RC, Jiang G, Droege M, Choi D, Kang BC, Kim BD, Park M, Kim S, Yeom SI, Lee YH, Choi YD, Li G, Gao J, Liu Y, Huang S, Fernandez-Pedrosa V, Collado C, Zuñiga S, Wang G, Cade R, Dietrich RA, Rogers J, Knapp S, Fei Z, White RA, Thannhauser TW, Giovannoni JJ, Botella MA, Gilbert L, Gonzalez R, Goicoechea JL, Yu Y, Kudrna D, Collura K, Wissotski M, Wing R, Meyers BC, Gurazada AB, Green PJ, Vyas SM, Solanke AU, Kumar R, Gupta V, Sharma AK, Khurana P, Khurana JP, Tyagi AK, Dalmay T, Mohorianu I, Walts B, Chamala S, Barbazuk WB, Li J, Guo H, Lee TH, Wang Y, Zhang D, Paterson AH, Wang X, Tang H, Barone A, Chiusano ML, Ercolano MR, D'Agostino N, Di Filippo M, Traini A, Sanseverino W, Frusciante L, Seymour GB, Elharam M, Fu Y, Hua A, Kenton S, Lewis J, Lin S, Najar F, Lai H, Qin B, Qu C, Shi R, White D, White J, Xing Y, Yang K, Yi J, Yao Z, Zhou L, Roe BA, Vezzi A, D'Angelo M, Zimbello R, Schiavon R, Caniato E, Rigobello C, Campagna D, Vitulo N, Valle G, Nelson DR, De Paoli E, Szinay D, de Jong HH, Bai Y, Visser RG, Klein R, Beasley H, McLaren K, Nicholson C, Riddle C, Gianese G./titolo:The tomato genome sequence provides insights into fleshy fruit evolution/doi:10.1038%2Fnature11119/rivista:Nature (Lond.)/anno:2012/pagina_da:635/pagina_a:641/intervallo_pagine:635–641/volume:485
Nature (Lond.) May 30 (2012): 635–641. doi:10.1038/nature11119
info:cnr-pdr/source/autori:Tomato Genome Consortium/titolo:The tomato genome sequence provides insights into fleshy fruit evolution./doi:10.1038%2Fnature11119/rivista:Nature (Lond.)/anno:2012/pagina_da:635/pagina_a:641/intervallo_pagine:635–641/volume:May 30
Dipòsit Digital de la UB
Universidad de Barcelona
r-IIS La Fe. Repositorio Institucional de Producción Científica del Instituto de Investigación Sanitaria La Fe
Nature, Nature Publishing Group, 2012, 485 (7400), pp.635-641. ⟨10.1038/nature11119⟩
info:cnr-pdr/source/autori:Sato, Shusei and Tabata, Satoshi and Hirakawa, Hideki and Asamizu, Erika and Shirasawa, Kenta and Isobe, Sachiko and Kaneko, Takakazu and Nakamura, Yasukazu and Shibata, Daisuke and Aoki, Koh and Egholm, Michael and Knight, James and Bogden, Robert and Li, Changbao and Shuang, Yang and Xu, Xun and Pan, Shengkai and Cheng, Shifeng and Liu, Xin and Ren, Yuanyuan and Wang, Jun and Albiero, Alessandro and Dal Pero, Francesca and Todesco, Sara and Van Eck, Joyce and Buels, Robert M. and Bombarely, Aureliano and Gosselin, Joseph R. and Huang, Minyun and Leto, Jonathan A. and Menda, Naama and Strickler, Susan and Mao, Linyong and Gao, Shan and Tecle, Isaak Y. and York, Thomas and Zheng, Yi and Vrebalov, Julia T. and Lee, JeMin and Zhong, Silin and Mueller, Lukas A. and Stiekema, Willem J. and Ribeca, Paolo and Alioto, Tyler and Yang, Wencai and Huang, Sanwen and Du, Yongchen and Zhang, Zhonghua and Gao, Jianchang and Guo, Yanmei and Wang, Xiaoxuan and Li, Ying and He, Jun and Li, Chuanyou and Cheng, Zhukuan and Zuo, Jianru and Ren, Jianfeng and Zhao, Jiuhai and Yan, Liuhua and Jiang, Hongling and Wang, Bao and Li, Hongshuang and Li, Zhenjun and Fu, Fuyou and Chen, Bingtang and Han, Bin and Feng, Qi and Fan, Danlin and Wang, Ying and Ling, Hongqing and Xue, Yongbiao and Ware, Doreen and McCombie, W. Richard and Lippman, Zachary B. and Chia, Jer-Ming and Jiang, Ke and Pasternak, Shiran and Gelley, Laura and Kramer, Melissa and Anderson, Lorinda K. and Chang, Song-Bin and Royer, Suzanne M. and Shearer, Lindsay A. and Stack, Stephen M. and Rose, Jocelyn K. C. and Xu, Yimin and Eannetta, Nancy and Matas, Antonio J. and McQuinn, Ryan and Tanksley, Steven D. and Camara, Francisco and Guigo, Roderic and Rombauts, Stephane and Fawcett, Jeffrey and Van de Peer, Yves and Zamir, Dani and Liang, Chunbo and Spannagl, Manuel and Gundlach, Heidrun and Bruggmann, Remy and Mayer, Klaus and Jia, Zhiqi and Zhang, Junhong and Ye, Zhibiao and Bishop, Gerard J. and Butcher, Sarah and Lopez-Cobollo, Rosa and Buchan, Daniel and Filippis, Ioannis and Abbott, James and Dixit, Rekha and Singh, Manju and Singh, Archana and Pal, Jitendra Kumar and Pandit, Awadhesh and Singh, Pradeep Kumar and Mahato, Ajay Kumar and Dogra, Vivek and Gaikwad, Kishor and Sharma, Tilak Raj and Mohapatra, Trilochan and Singh, Nagendra Kumar and Causse, Mathilde and Rothan, Christophe and Schiex, Thomas and Noirot, Celine and Bellec, Arnaud and Klopp, Christophe and Delalande, Corinne and Berges, Helene and Mariette, Jerome and Frasse, Pierre and Vautrin, Sonia and Zouine, Mohamed and Latche, Alain and Rousseau, Christine and Regad, Farid and Pech, Jean-Claude and Philippot, Murielle and Bouzayen, Mondher and Pericard, Pierre and Osorio, Sonia and Fernandez del Carmen, Asuncion and Monforte, Antonio and Granell, Antonio and Fernandez-Munoz, Rafael and Conte, Mariana and Lichtenstein, Gabriel and Carrari, Fernando and De Bellis, Gianluca and Fuligni, Fabio and Peano, Clelia and Grandillo, Silvana and Termolino, Pasquale and Pietrella, Marco and Fantini, Elio and Falcone, Giulia and Fiore, Alessia and Giuliano, Giovanni and Lopez, Loredana and Facella, Paolo and Perrotta, Gaetano and Daddiego, Loretta and Bryan, Glenn and Orozco, Modesto and Pastor, Xavier and Torrents, David and van Schriek, Keygene N. V. Marco G. M. and Feron, Richard M. C. and van Oeveren, Jan and de Heer, Peter and daPonte, Lorena and Jacobs-Oomen, Saskia and Cariaso, Mike and Prins, Marcel and van Eijk, Michiel J. T. and Janssen, Antoine and van Haaren, Mark J. J. and Jo, Sung-Hwan and Kim, Jungeun and Kwon, Suk-Yoon and Kim, Sangmi and Koo, Dal-Hoe and Lee, Sanghyeob and Hur, Cheol-Goo and Clouser, Christopher and Rico, Alain and Hallab, Asis and Gebhardt, Christiane and Klee, Kathrin and Joecker, Anika and Warfsmann, Jens and Goebel, Ulrike and Kawamura, Shingo and Yano, Kentaro and Sherman, Jamie D. and Fukuoka, Hiroyuki and Negoro, Satomi and Bhutty, Sarita and Chowdhury, Parul and Chattopadhyay, Debasis and Datema, Erwin and Smit, Sandra and Schijlen, Eliog. W. M. and van de Belt, Jose and van Haarst, Jan C. and Peters, Sander A. and van Staveren, Marjo J. and Henkens, Marleen H. C. and Mooyman, Paul J. W. and Hesselink, Thamara and van Ham, Roeland C. H. J. and Jiang, Guoyong and Droege, Marcus and Choi, Doil and Kang, Byung-Cheol and Kim, Byung Dong and Park, Minkyu and Kim, Seungill and Yeom, Seon-In and Lee, Yong-Hwan and Choi, Yang-Do and Li, Guangcun and Gao, Jianwei and Liu, Yongsheng and Huang, Shengxiong and Fernandez-Pedrosa, Victoria and Collado, Carmen and Zuniga, Sheila and Wang, Guoping and Cade, Rebecca and Dietrich, Robert A. and Rogers, Jane and Knapp, Sandra and Fei, Zhangjun and White, Ruth A. and Thannhauser, Theodore W. and Giovannoni, James J. and Angel Botella, Miguel and Gilbert, Louise and Gonzalez, Ramon and Goicoechea, Jose Luis and Yu, Yeisoo and Kudrna, David and Collura, Kristi and Wissotski, Marina and Wing, Rod and Schoof, Heiko and Meyers, Blake C. and Gurazada, Aishwarya Bala and Green, Pamela J. and Mathur, Saloni and Vyas, Shailendra and Solanke, Amolkumar U. and Kumar, Rahul and Gupta, Vikrant and Sharma, Arun K. and Khurana, Paramjit and Khurana, Jitendra P. and Tyagi, Akhilesh K. and Dalmay, Tamas and Mohorianu, Irina and Walts, Brandon and Chamala, Srikar and Barbazuk, W. Brad and Li, Jingping and Guo, Hui and Lee, Tae-Ho and Wang, Yupeng and Zhang, Dong and Paterson, Andrew H. and Wang, Xiyin and Tang, Haibao and Barone, Amalia and Chiusano, Maria Luisa and Ercolano, Maria Raffaella and D'Agostino, Nunzio and Di Filippo, Miriam and Traini, Alessandra and Sanseverino, Walter and Frusciante, Luigi and Seymour, Graham B. and Elharam, Mounir and Fu, Ying and Hua, Axin and Kenton, Steven and Lewis, Jennifer and Lin, Shaoping and Najar, Fares and Lai, Hongshing and Qin, Baifang and Qu, Chunmei and Shi, Ruihua and White, Douglas and White, James and Xing, Yanbo and Yang, Keqin and Yi, Jing and Yao, Ziyun and Zhou, Liping and Roe, Bruce A. and Vezzi, Alessandro and D'Angelo, Michela and Zimbello, Rosanna and Schiavon, Riccardo and Caniato, Elisa and Rigobello, Chiara and Campagna, Davide and Vitulo, Nicola and Valle, Giorgio and Nelson, David R. and De Paoli, Emanuele and Szinay, Dora and de Jong, Hans H. and Bai, Yuling and Visser, Richard G. F. and Lankhorst, Rene M. Klein and Beasley, Helen and McLaren, Karen and Nicholson, Christine and Riddle, Claire and Gianese, Giulio and Tomato Genome Consortium/titolo:The tomato genome sequence provides insights into fleshy fruit evolution/doi:10.1038%2Fnature11119/rivista:Nature (Lond.)/anno:2012/pagina_da:635/pagina_a:641/intervallo_pagine:635–641/volume:485
Nature, 485, 635-641
RiuNet. Repositorio Institucional de la Universitat Politécnica de Valéncia

[EN] Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera(1) and includes annual and perennial plants from diverse habitats. Here we present a high-quality genom

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::57f32b39349c44570fae56dec0714193
http://hdl.handle.net/10230/23074