A Pleiotropic Flowering Time QTL Exhibits Gene-by-Environment Interaction for Fitness in a Perennial Grass.

Autor: Weng X; Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA., Haque T; Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA., Zhang L; Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA., Razzaque S; Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA., Lovell JT; HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Palacio-Mejía JD; Corporación Colombiana de Investigación Agropecuaria - AGROSAVIA, Centro de Investigación Tibaitatá. Kilómetro 14 vía Mosquera-Bogotá, Mosquera. Código postal 250047, Colombia., Duberney P; Kika de la Garza Plant Materials Center, USDA-NRCS, Kingsville, TX, USA., Lloyd-Reilley J; Kika de la Garza Plant Materials Center, USDA-NRCS, Kingsville, TX, USA., Bonnette J; Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA., Juenger TE; Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA.

Publikováno v: Molecular biology and evolution [Mol Biol Evol] 2022 Oct 07; Vol. 39 (10).

Geographic variation in the genetic basis of resistance to leaf rust between locally adapted ecotypes of the biofuel crop switchgrass (Panicum virgatum).

Autor: VanWallendael A; Department of Plant Biology, Michigan State University, East Lansing, MI, 48824, USA.; Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, 48824, USA.; Department of Ecology, Evolutionary Biology, and Behavior, Michigan State University, East Lansing, MI, 48824, USA.; Plant Resilience Institute, Michigan State University, East Lansing, MI, 48824, USA., Bonnette J; Department of Integrative Biology, University of Texas at Austin, Austin, TX, 78712, USA., Juenger TE; Department of Integrative Biology, University of Texas at Austin, Austin, TX, 78712, USA., Fritschi FB; Division of Plant Sciences, University of Missouri, Columbia, MO, 65201, USA., Fay PA; Soil and Water Research Laboratory, USDA-ARS Grassland, Temple, TX, 76508, USA., Mitchell RB; USDA-ARS Wheat, Sorghum, and Forage Research Unit, University of Nebraska, Lincoln, NE, 68588, USA., Lloyd-Reilley J; USDA-NRCS, Kika de la Garza Plant Materials Center, Kingsville, TX, 78572, USA., Rouquette FM Jr; Texas A&M AgriLife Research, Texas A&M AgriLife Research and Extension Center, Overton, TX, 75684, USA., Bergstrom GC; School of Integrative Plant Science, Cornell University, Ithaca, NY, 14850, USA., Lowry DB; Department of Plant Biology, Michigan State University, East Lansing, MI, 48824, USA.; Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, 48824, USA.; Department of Ecology, Evolutionary Biology, and Behavior, Michigan State University, East Lansing, MI, 48824, USA.; Plant Resilience Institute, Michigan State University, East Lansing, MI, 48824, USA.

Publikováno v: The New phytologist [New Phytol] 2020 Sep; Vol. 227 (6), pp. 1696-1708. Date of Electronic Publication: 2020 Apr 22.

Cell Identity and Spatial Distribution of PD‐1/PD‐L1 Blockade Responders.

Autor: Li, Xintong¹ (AUTHOR), Liu, Yuanxin¹ (AUTHOR), Gui, Jun² (AUTHOR), Gan, Lu³ (AUTHOR) ganlu@wchscu.cn, Xue, Jianxin⁴ (AUTHOR) jianxin-xue@wchscu.edu.cn

Publikováno v: Advanced Science. 11/6/2024, Vol. 11 Issue 41, p1-23. 23p.

Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass.

Autor: Lovell JT; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA. jlovell@hudsonalpha.org., MacQueen AH; Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA., Mamidi S; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Bonnette J; Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA., Jenkins J; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Napier JD; Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA., Sreedasyam A; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Healey A; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Session A; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA., Shu S; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Barry K; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Bonos S; Department of Plant Biology, Rutgers University, New Brunswick, NJ, USA., Boston L; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Daum C; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Deshpande S; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Ewing A; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Grabowski PP; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Haque T; Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA., Harrison M; Plant Genetic Resources Conservation Unit, USDA-ARS, Griffin, GA, USA., Jiang J; Department of Plant Biology, Michigan State University, East Lansing, MI, USA., Kudrna D; Arizona Genomics Institute, University of Arizona, Tucson, AZ, USA., Lipzen A; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Pendergast TH 4th; Institute of Plant Breeding, Genetics and Genomics, University of Georgia, Athens, GA, USA.; Department of Crop and Soil Sciences, University of Georgia, Athens, GA, USA.; Department of Plant Biology, University of Georgia, Athens, GA, USA., Plott C; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Qi P; Institute of Plant Breeding, Genetics and Genomics, University of Georgia, Athens, GA, USA., Saski CA; Department of Plant and Environmental Sciences, Clemson University, Clemson, SC, USA., Shakirov EV; Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA.; Department of Biological Sciences, Marshall University, Huntington, WV, USA., Sims D; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Sharma M; School of Biotechnology, Jawaharlal Nehru University, New Delhi, India., Sharma R; School of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi, India., Stewart A; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Singan VR; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Tang Y; Noble Research Institute LLC, Ardmore, OK, USA., Thibivillier S; Department of Agronomy and Horticulture, University of Nebraska, Lincoln, NE, USA., Webber J; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Weng X; Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA., Williams M; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Wu GA; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Yoshinaga Y; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Zane M; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Zhang L; Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA., Zhang J; Noble Research Institute LLC, Ardmore, OK, USA., Behrman KD; Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA., Boe AR; Department of Agronomy, Horticulture and Plant Science, South Dakota State University, Brookings, SD, USA., Fay PA; Grassland, Soil and Water Research Laboratory, USDA-ARS, Temple, TX, USA., Fritschi FB; Division of Plant Sciences, University of Missouri, Columbia, MO, USA., Jastrow JD; Environmental Science Division, Argonne National Laboratory, Lemont, IL, USA., Lloyd-Reilley J; Kika de la Garza Plant Materials Center, USDA-NRCS, Kingsville, TX, USA., Martínez-Reyna JM; Plant Breeding Department, Antonio Narro Agrarian Autonomous University, Saltillo, Mexico., Matamala R; Environmental Science Division, Argonne National Laboratory, Lemont, IL, USA., Mitchell RB; Wheat, Sorghum, and Forage Research Unit, USDA-ARS, Lincoln, NE, USA., Rouquette FM Jr; Texas A&M AgriLife Research and Extension Center, Texas A&M University, Overton, TX, USA., Ronald P; Department of Plant Pathology and the Genome Center, University of California, Davis, Davis, CA, USA.; Joint BioEnergy Institute, Emeryville, CA, USA., Saha M; Noble Research Institute LLC, Ardmore, OK, USA., Tobias CM; Western Regional Research Center, USDA-ARS, Albany, CA, USA., Udvardi M; Noble Research Institute LLC, Ardmore, OK, USA., Wing RA; Arizona Genomics Institute, University of Arizona, Tucson, AZ, USA., Wu Y; Department of Plant and Soil Sciences, Oklahoma State University, Stillwater, OK, USA., Bartley LE; Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA.; Institute of Biological Chemistry, Washington State University, Pullman, WA, USA., Casler M; US Dairy Forage Research Center, USDA-ARS, Madison, WI, USA.; DOE Great Lakes Bioenergy Research Center, University of Wisconsin, Madison, WI, USA., Devos KM; Institute of Plant Breeding, Genetics and Genomics, University of Georgia, Athens, GA, USA.; Department of Crop and Soil Sciences, University of Georgia, Athens, GA, USA.; Department of Plant Biology, University of Georgia, Athens, GA, USA.; DOE Center for Bioenergy Innovation, Oak Ridge, TN, USA., Lowry DB; Department of Plant Biology, Michigan State University, East Lansing, MI, USA.; DOE Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, USA., Rokhsar DS; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.; Center for Advanced Bioenergy and Bioproducts Innovation, Berkeley, CA, USA.; Chan-Zuckerberg Biohub, San Francisco, CA, USA., Grimwood J; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Juenger TE; Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA. tjuenger@mail.utexas.edu., Schmutz J; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA. jschmutz@hudsonalpha.org.; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA. jschmutz@hudsonalpha.org.

Publikováno v: Nature [Nature] 2021 Feb; Vol. 590 (7846), pp. 438-444. Date of Electronic Publication: 2021 Jan 27.

The integration of whole‐genome resequencing and ecological niche modelling to conserve profiles of local adaptation.

Autor: Jeon, Jong Yoon¹ (AUTHOR) jeon96@purdue.edu, Shin, Yucheol² (AUTHOR), Mularo, Andrew J.³ (AUTHOR), Feng, Xiao⁴ (AUTHOR), DeWoody, J. Andrew^1,3 (AUTHOR)

Publikováno v: Diversity & Distributions. Jun2024, Vol. 30 Issue 6, p1-15. 15p.