cDNA library construction from a small amount of RNA: adaptor-ligation approach for two-round cRNA amplification using T7 and SP6 RNA polymerases

Autor: Reiko Ohara, Reiko F. Kikuno, Hiroshi Kitamura, Osamu Ohara

Publikováno v: BioTechniques, Vol 38, Iss 3, Pp 451-458 (2005)

In this study, we developed a method that allows cDNA library construction from a small amount of RNA without causing serious size bias in the resulting cDNA population. For this purpose, we adopted two-round cRNA amplification by T7 and SP6 RNA poly

Externí odkaz: https://doaj.org/article/bfce0059b2c34dd78009e97b9341a5c0

Evaluation of the effect of CpG hypermutability on human codon substitution

Autor: Kazuharu Misawa, Reiko F. Kikuno

Publikováno v: Gene. 431:18-22

Understanding the cause underlying the changes in amino acid composition of proteins is essential for understanding protein evolution and function. Accurate models of DNA and protein evolution are essential for studying molecular evolution. Although

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b380ff56cfa0b7c4361154d4de8d677d
https://doi.org/10.1016/j.gene.2008.11.006

Expansion of the Human Micro RNA Gene Repertoire in the Human Lineage after the Divergence of Old World and New World Monkeys

Autor: Reiko F Kikuno

Publikováno v: Journal of Theoretical and Computational Science. 1

It has been widely postulated that micro RNAs (miRNAs) have played an important role in achieving morphological complexity during the course of eumetazoan evolution, because the miRNA repertoire has continually increased along with greater complexity

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b4813a29e5f1bb3afeb433b73d806d20
https://doi.org/10.4172/jtco.1000102

Human Proteinpedia enables sharing of human protein data

Autor: Ron Bose, Jean-Charles Sanchez, Young Jin Lee, Marcus Bantscheff, Pia Hønnerup Jensen, Yunping Zhu, Jonathan C. Trinidad, Juan Martínez-Heredia, Michael Moran, Samir K. Brahmachari, Pierre Gagné, Kripa Shankari, Jeffrey C. Smith, Jose-Manuel Vidal-Taboada, James P. DeLany, Shi Jun Sheng, Ragna Rönnholm, Xosé R. Bustelo, Helene L. Cardasis, Erik Björling, Ole N. Jensen, Pavel Gromov, Michael J. Dunn, Xiaoyue Wang, Guy G. Poirier, Greg T. Cantin, Richard J. Simpson, Kenny Helsens, Ming Zhou, Sumio Sugano, Samir M. Hanash, Prashantha Hebbar, Y. L. Ramachandra, Jennifer E. Van Eyk, Rafael Oliva, Philip C. Andrews, Lennart Martens, Julio E. Celis, B. Abdul Rahiman, Alexander Mehrle, Feixia Chu, Richard D. Smith, Philip A. Cole, Leroi V. DeSouza, Stefan Wiemann, Joseph A. Loo, Bernhard Kuster, Mauno Vihinen, Peter Jung, David C. Muddiman, Jayson A. Falkner, Osamu Ohara, Fredrik Levander, Gerald W. Hart, Mukhtar Ahmed, T. S. Keshava Prasad, Eric W. Deutsch, Riaz Mohmood, Indu Kheterpal, Jeffrey M. Gimble, John R. Yates, Catherine Fenselau, Timothy D. Veenstra, Julian Vasilescu, Brian M. Balgley, Heiko Hermeking, Johanna Salonen, Rainer Pepperkok, Michael Lefevre, William S. Hancock, Visith Thongboonkerd, Tao Xu, Beerelli Seshi, Christine A. Miller, Florian Gnad, Ravi Sirdeshmukh, Arnaud Droit, Renu Goel, Maarit Takatalo, Emanuel F. Petricoin, Mathias Uhlén, Vitor M. Faça, Billy Wu, Robert J. Cotter, Angelo M. De Marzo, Mark E. McComb, Alma S Burlingame, Oliver Hofmann, Martine Morzel, Rajasree Menon, Denis F. Hochstrasser, Peter James, Matthew J. Sullivan, Robin Wait, K. W. Michael Siu, H. C. Harsha, Hainard Alexandre, Megan S. Lim, Winston Hide, Kris Gevaert, Harald Mischak, Thierry Sayd, Matthias Mann, Blagoy Blagoev, Gerard Cagney, Xiangming Fang, Ralph H. Hruban, James D. Morgan, Joel S. Bader, Samuel O. Purvine, Fuchu He, Robert Moritz, Rob M. Ewing, Daniel Figeys, Min-Seok Kwon, Kumaran Kandasamy, Reiko F. Kikuno, Masaaki Oyama, Cecilia Gelfi, Gilbert S. Omenn, James P. McRedmond, Pierre Lescuyer, Kojo S.J. Elenitoba-Johnson, Akhilesh Pandey, Joël Vandekerckhove, Karin Hjernø, Subburaman Mohan, Jens Rick, Kyla Pennington, Raghothama Chaerkady, Henrik Molina, David M Horn, Faith A. Hays, Young Ki Paik, Balamurugan Periaswamy, Giulio Superti-Furga, Roman Körner, Gerard Drewes, Jun Zhong, E. Dransfield, Suresh Mathivanan, Robert H. Rice, David K. Crockett, Thomas A. Neubert, Minna Lehvaslaiho, K. Shivakumar, Catherine E. Costello, Hyoung Joo Lee, Christian Löbke, Keiryn L. Bennett, Nieves Ibarrola, Ramars Amanchy, Petra Zürbig, Vivekananda Shetty, Natalie G. Ahn, Ulrike Korf, J. Daniel Navarro, Anuradha Nalli, Prasanna Ramachandran, David J. States

Publikováno v: Mathivanan, S, Ahmed, M, Ahn, N G, Alexandre, H, Amanchy, R, Andrews, P C, Bader, J S, Balgley, B M, Bantscheff, M, Bennett, K L, Björling, E, Blagoev, B, Bose, R, Brahmachari, S K, Burlingame, A S, Bustelo, X R, Cagney, G, Cantin, G T, Cardasis, H L, Celis, J E, Chaerkady, R, Chu, F, Cole, P A, Costello, C E, Cotter, R J, Crockett, D, DeLany, J P, De Marzo, A M, DeSouza, L V, Deutsch, E W, Dransfield, E, Drewes, G, Droit, A, Dunn, M J, Elenitoba-Johnson, K, Ewing, R M, Van Eyk, J, Faca, V, Falkner, J, Fang, X, Fenselau, C, Figeys, D, Gagné, P, Gelfi, C, Gevaert, K, Gimble, J M, Gnad, F, Goel, R, Gromov, P, Hanash, S M, Hancock, W S, Harsha, H C, Hart, G, Hays, F, He, F, Hebbar, P, Helsens, K, Hermeking, H, Hide, W, Hjernø, K, Hochstrasser, D F, Hofmann, O, Horn, D M, Hruban, R H, Ibarrola, N, James, P, Jensen, O N, Jensen, P H, Jung, P, Kandasamy, K, Kheterpal, I, Kikuno, R F, Korf, U, Körner, R, Kuster, B, Kwon, M-S, Lee, H-J, Lee, Y-J, Lefevre, M, Lehvaslaiho, M, Lescuyer, P, Levander, F, Lim, M S, Löbke, C, Loo, J A, Mann, M, Martens, L, Martinez-Heredia, J, McComb, M, McRedmond, J, Mehrle, A, Menon, R, Miller, C A, Mischak, H, Mohan, S S, Mohmood, R, Molina, H, Moran, M F, Morgan, J D, Moritz, R, Morzel, M, Muddiman, D C, Nalli, A, Navarro, J D, Neubert, T A, Ohara, O, Oliva, R, Omenn, G S, Oyama, M, Paik, Y-K, Pennington, K, Pepperkok, R, Periaswamy, B, Petricoin, E F, Poirier, G G, Prasad, T S K, Purvine, S O, Rahiman, B A, Ramachandran, P, Ramachandra, Y L, Rice, R H, Rick, J, Ronnholm, R H, Salonen, J, Sanchez, J-C, Sayd, T, Seshi, B, Shankari, K, Sheng, S J, Shetty, V, Shivakumar, K, Simpson, R J, Sirdeshmukh, R, Siu, K W M, Smith, J C, Smith, R D, States, D J, Sugano, S, Sullivan, M, Superti-Furga, G, Takatalo, M, Thongboonkerd, V, Trinidad, J C, Uhlen, M, Vandekerckhove, J, Vasilescu, J, Veenstra, T D, Vidal-Taboada, J-M, Vihinen, M, Wait, R, Wang, X, Wiemann, S, Wu, B, Xu, T, Yates, J R, Zhong, J, Zhou, M, Zhu, Y, Zurbig, P & Pandey, A 2008, ' Human Proteinpedia enables sharing of human protein data ', Nature Biotechnology, vol. 26, no. 2, pp. 164-167 . https://doi.org/10.1038/nbt0208-164
Nature Biotechnology
Nature Biotechnology, 2008, 26 (2), pp.164-167. ⟨10.1038/nbt0208-164⟩
Nature Biotechnology, Nature Publishing Group, 2008, 26 (2), pp.164-167. ⟨10.1038/nbt0208-164⟩
Nature Biotechnology, Vol. 26, No 2 (2008) pp. 164-167

Proteomic technologies, such as yeast two-hybrid, mass spectrometry (MS), protein/peptide arrays and fluorescence microscopy, yield multi-dimensional data sets, which are often quite large and either not published or published as supplementary inform

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e4d4ec2da9e21964853baaa48a5e228f
https://portal.findresearcher.sdu.dk/da/publications/23073830-00b1-11dd-9e03-000ea68e967b