Zobrazeno 1 - 10
of 53
pro vyhledávání: '"Rebecca J. Rockett"'
Autor:
Winkie Fong, Rebecca J. Rockett, Jessica E. Agius, Shona Chandra, Jessica Johnson-Mckinnon, Eby Sim, Connie Lam, Alicia Arnott, Mailie Gall, Jenny Draper, Susan Maddocks, Sharon Chen, Jen Kok, Dominic Dwyer, Matthew O’Sullivan, Vitali Sintchenko
Publikováno v:
BMC Infectious Diseases, Vol 23, Iss 1, Pp 1-7 (2023)
Abstract The emergence of resistance to antiviral drugs increasingly used to treat SARS-CoV-2 infections has been recognised as a significant threat to COVID-19 control. In addition, some SARS-CoV-2 variants of concern appear to be intrinsically resi
Externí odkaz:
https://doaj.org/article/4fc407e2a2984577978554c2ee02e675
A laboratory framework for ongoing optimization of amplification-based genomic surveillance programs
Autor:
Connie Lam, Jessica Johnson-Mackinnon, Kerri Basile, Winkie Fong, Carl J.E. Suster, Mailie Gall, Jessica Agius, Shona Chandra, Jenny Draper, Elena Martinez, Alexander Drew, Qinning Wang, Sharon C. Chen, Jen Kok, Dominic E. Dwyer, Vitali Sintchenko, Rebecca J. Rockett
Publikováno v:
Microbiology Spectrum, Vol 11, Iss 6 (2023)
ABSTRACT Constantly evolving viral populations affect the specificity of primers and the quality of genomic surveillance. This study presents a framework for the continuous optimization of sequencing efficiency for public health surveillance based on
Externí odkaz:
https://doaj.org/article/c8506cf497274da69108601f2e1d8cca
Autor:
Rebecca J. Rockett, Jenny Draper, Mailie Gall, Eby M. Sim, Alicia Arnott, Jessica E. Agius, Jessica Johnson-Mackinnon, Winkie Fong, Elena Martinez, Alexander P. Drew, Clement Lee, Christine Ngo, Marc Ramsperger, Andrew N. Ginn, Qinning Wang, Michael Fennell, Danny Ko, Linda Hueston, Lukas Kairaitis, Edward C. Holmes, Matthew N. O’Sullivan, Sharon C.-A. Chen, Jen Kok, Dominic E. Dwyer, Vitali Sintchenko
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-7 (2022)
Here, using genomic approaches, Rockett et al. identify Omicron and Delta SARS-CoV-2 co-infections in two adults, highlighting the usefulness of genomic surveillance for the timely recognition of co-infections in situations when different variants of
Externí odkaz:
https://doaj.org/article/38f87202ab14461b82215251ef687d21
Autor:
Adam J. Svahn, Sheryl L. Chang, Rebecca J. Rockett, Oliver M. Cliff, Qinning Wang, Alicia Arnott, Marc Ramsperger, Tania C. Sorrell, Vitali Sintchenko, Mikhail Prokopenko
Publikováno v:
International Journal of Infectious Diseases, Vol 117, Iss , Pp 65-73 (2022)
Objectives: To enhance monitoring of high-burden foodborne pathogens, there is opportunity to combine pangenome data with network analysis. Methods: Salmonella enterica subspecies Enterica serovar Enteritidis isolates were referred to the New South W
Externí odkaz:
https://doaj.org/article/2574b9c8d4f947a79c1c63725d5990b2
Autor:
Alicia Arnott, Jenny Draper, Rebecca J. Rockett, Connie Lam, Rosemarie Sadsad, Mailie Gall, Elena Martinez, Roy Byun, Jennie Musto, Ben Marais, Sharon C.-A. Chen, Jen Kok, Dominic E. Dwyer, Vitali Sintchenko
Publikováno v:
BMC Research Notes, Vol 14, Iss 1, Pp 1-4 (2021)
Abstract Objective To adapt ‘fishplots’ to describe real-time evolution of SARS-CoV-2 genomic clusters. Results This novel analysis adapted the fishplot to depict the size and duration of circulating genomic clusters over time in New South Wales,
Externí odkaz:
https://doaj.org/article/00334b117b2c4864a7b36ed6aa576f8e
Autor:
Carl J. E. Suster, Alicia Arnott, Grace Blackwell, Mailie Gall, Jenny Draper, Elena Martinez, Alexander P. Drew, Rebecca J. Rockett, Sharon C.-A. Chen, Jen Kok, Dominic E. Dwyer, Vitali Sintchenko
Publikováno v:
Frontiers in Public Health, Vol 10 (2022)
Genomic surveillance of SARS-CoV-2 has been essential to inform public health response to outbreaks. The high incidence of infection has resulted in a smaller proportion of cases undergoing whole genome sequencing due to finite resources. We present
Externí odkaz:
https://doaj.org/article/d01f1ef409bf462c8dbaf704c2cd6af4
Autor:
Jessica E. Agius, Jessica C. Johnson-Mackinnon, Winkie Fong, Mailie Gall, Connie Lam, Kerri Basile, Jen Kok, Alicia Arnott, Vitali Sintchenko, Rebecca J. Rockett
Publikováno v:
Frontiers in Microbiology, Vol 13 (2022)
BackgroundLow frequency intrahost single nucleotide variants (iSNVs) of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) have been increasingly recognised as predictive indicators of positive selection. Particularly as growing numbers of
Externí odkaz:
https://doaj.org/article/9e3cfd6308464cbe9868341a704089b8
Autor:
Kerri Basile, Rebecca J. Rockett, Kenneth McPhie, Michael Fennell, Jessica Johnson-Mackinnon, Jessica E. Agius, Winkie Fong, Hossinur Rahman, Danny Ko, Linda Donavan, Linda Hueston, Connie Lam, Alicia Arnott, Sharon C.-A. Chen, Susan Maddocks, Matthew V. O’Sullivan, Dominic E. Dwyer, Vitali Sintchenko, Jen Kok
Publikováno v:
Viruses, Vol 14, Iss 9, p 2023 (2022)
In late November 2021, the World Health Organization declared the SARS-CoV-2 lineage B.1.1.529 the fifth variant of concern, Omicron. This variant has acquired over 30 mutations in the spike protein (with 15 in the receptor-binding domain), raising c
Externí odkaz:
https://doaj.org/article/8dda37bba9e34d4c9c7bf42985c2af33
Publikováno v:
Viruses, Vol 14, Iss 8, p 1760 (2022)
In order to rapidly differentiate sublineages BA.1 and BA.2 of the SARS-CoV-2 variant of concern Omicron, we developed a real-time reverse-transcriptase polymerase chain reaction to target the discriminatory spike protein deletion at amino acid posit
Externí odkaz:
https://doaj.org/article/bb9b9627cf8b4c65ab12ea79ed23da7e
Autor:
Charles S. P. Foster, Sacha Stelzer-Braid, Ira W. Deveson, Rowena A. Bull, Malinna Yeang, Jane-Phan Au, Mariana Ruiz Silva, Sebastiaan J. van Hal, Rebecca J. Rockett, Vitali Sintchenko, Ki Wook Kim, William D. Rawlinson
Publikováno v:
Viruses, Vol 14, Iss 2, p 185 (2022)
Whole-genome sequencing of viral isolates is critical for informing transmission patterns and for the ongoing evolution of pathogens, especially during a pandemic. However, when genomes have low variability in the early stages of a pandemic, the impa
Externí odkaz:
https://doaj.org/article/ae31c98dd38547348e6ad652682e6d88