Zobrazeno 1 - 10
of 437
pro vyhledávání: '"Read-mapping"'
Publikováno v:
BMC Bioinformatics, Vol 25, Iss 1, Pp 1-27 (2024)
Abstract Background Genome assembly, which involves reconstructing a target genome, relies on scaffolding methods to organize and link partially assembled fragments. The rapid evolution of long read sequencing technologies toward more accurate long r
Externí odkaz:
https://doaj.org/article/8855adf1018045b6a1925844aeb6bc17
Publikováno v:
Genome Biology, Vol 25, Iss 1, Pp 1-19 (2024)
Abstract Nucleotide conversion RNA sequencing techniques interrogate chemical RNA modifications in cellular transcripts, resulting in mismatch-containing reads. Biases in mapping the resulting reads to reference genomes remain poorly understood. We p
Externí odkaz:
https://doaj.org/article/82b79117ed5b4c5591dea76d334124af
Autor:
Tizian Schulz, Paul Medvedev
Publikováno v:
Algorithms for Molecular Biology, Vol 19, Iss 1, Pp 1-14 (2024)
Abstract Background Given a sequencing read, the broad goal of read mapping is to find the location(s) in the reference genome that have a “similar sequence”. Traditionally, “similar sequence” was defined as having a high alignment score and
Externí odkaz:
https://doaj.org/article/89c9298a0ec2426a9abe382955ff80f2
Publikováno v:
Algorithms for Molecular Biology, Vol 19, Iss 1, Pp 1-21 (2024)
Abstract The problem of sequence identification or matching—determining the subset of reference sequences from a given collection that are likely to contain a short, queried nucleotide sequence—is relevant for many important tasks in Computationa
Externí odkaz:
https://doaj.org/article/edf66e1b8cdf44abb9a00887e9b5d8c5
Publikováno v:
Frontiers in Plant Science, Vol 14 (2023)
Externí odkaz:
https://doaj.org/article/5f025032f4aa435a9f280e775d11ee56
Akademický článek
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Autor:
Kristoffer Sahlin
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-27 (2022)
Abstract Read alignment is often the computational bottleneck in analyses. Recently, several advances have been made on seeding methods for fast sequence comparison. We combine two such methods, syncmers and strobemers, in a novel seeding approach fo
Externí odkaz:
https://doaj.org/article/0cee7d1b8fad4cf5ac2ffd833ef576f3
Publikováno v:
BMC Genomics, Vol 23, Iss 1, Pp 1-15 (2022)
Abstract Background Mastitis is a very common disease in the dairy industry that producers encounter daily. Transcriptomics, using RNA-Sequencing (RNA - Seq) technology, can be used to study the functional aspect of mastitis resistance to identify an
Externí odkaz:
https://doaj.org/article/9beaf3b2714a4adc8c3b2efd7b9961de
Autor:
Mohammed Alser, Joel Lindegger, Can Firtina, Nour Almadhoun, Haiyu Mao, Gagandeep Singh, Juan Gomez-Luna, Onur Mutlu
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 20, Iss , Pp 4579-4599 (2022)
We now need more than ever to make genome analysis more intelligent. We need to read, analyze, and interpret our genomes not only quickly, but also accurately and efficiently enough to scale the analysis to population level. There currently exist maj
Externí odkaz:
https://doaj.org/article/8666527f6f054a95931fe915d38c8975
Akademický článek
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