Zobrazeno 1 - 10
of 20
pro vyhledávání: '"Raunaq Malhotra"'
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 15, Iss , Pp 388-395 (2017)
We propose a random forest classifier for detecting rare variants from sequencing errors in Next Generation Sequencing (NGS) data from viral populations. The method utilizes counts of varying length of k-mers from the reads of a viral population to t
Externí odkaz:
https://doaj.org/article/488ccf8c5c0747eda49d722525820c6b
Publikováno v:
PLoS Computational Biology, Vol 15, Iss 3, p e1006564 (2019)
Human Endogenous Retrovirus type K (HERV-K) is the only HERV known to be insertionally polymorphic; not all individuals have a retrovirus at a specific genomic location. It is possible that HERV-Ks contribute to human disease because people differ in
Externí odkaz:
https://doaj.org/article/1ba53ce11f8a48b891dec28a732679a9
Autor:
Le Bao, Daniel Elleder, Raunaq Malhotra, Michael DeGiorgio, Theodora Maravegias, Lindsay Horvath, Laura Carrel, Colin Gillin, Tomáš Hron, Helena Fábryová, David R. Hunter, Mary Poss
Publikováno v:
Computation, Vol 2, Iss 4, Pp 221-245 (2014)
Endogenous retroviruses (ERVs) are a class of transposable elements found in all vertebrate genomes that contribute substantially to genomic functional and structural diversity. A host species acquires an ERV when an exogenous retrovirus infects a ge
Externí odkaz:
https://doaj.org/article/c8d23ac26268428fa8b85dc08ced9921
Autor:
Rozlyn C.T. Boutin, Piush J. Mandhane, Theo J Moraes, Charisse Petersen, Stuart E. Turvey, Padmaja Subbarao, Allan B. Becker, Hind Sbihi, Darlene L.Y. Dai, Melissa Dsouza, Raunaq Malhotra, Meghan B. Azad, B. Brett Finlay, Malcolm R. Sears
Publikováno v:
Allergy. 75:2065-2068
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bee98dc8d9c03f5d5af6bfcef7d00235
https://doi.org/10.1111/all.14244
https://doi.org/10.1111/all.14244
Autor:
Mary Poss, Daniel Elleder, Raunaq Malhotra, Theodora Kaiser, Lei Yang, Jesse Rong, Rayan Chikhi, Paul Medvedev
Publikováno v:
Molecular Biology and Evolution
Background All vertebrate genomes have been colonized by retroviruses along their evolutionary trajectory. Although it is clear that endogenous retroviruses (ERVs) can contribute important physiological functions to contemporary hosts, such benefits
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2edcb520a12daf778134cebcfb609c34
https://pubmed.ncbi.nlm.nih.gov/34480565
https://pubmed.ncbi.nlm.nih.gov/34480565
Publikováno v:
Key Engineering Materials. 763:992-1001
Footfall induced vibrations can occur in elevated walking surfaces in structures due to normal human activities such as walking and running. If the vibrations are too high, they can cause occupant discomfort. Being able to reliably estimate the dynam
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d52a6c3e760f57ae8be53c7085e56435
https://doi.org/10.4028/www.scientific.net/kem.763.992
https://doi.org/10.4028/www.scientific.net/kem.763.992
Autor:
Damir Krstanovic, Brandi N. Davis-Dusenbery, Nick Groves-Kirkby, Gaurav Kaushik, Raunaq Malhotra, Aleksandar Mihajlovic, Vladimir Mladenović, Deniz Kural, Dragan Bajcic, Mladen Srdic, Igor Bogicevic, Jack DiGiovanna, Erik M. Lehnert, Jelena Radenkovic, Djordje Klisic, Zeynep Onder, V. Arsenijevic, Anurag Sethi, Milan Mitrovic, Jessica W. Lau
Publikováno v:
Cancer Research. 77:e3-e6
The Seven Bridges Cancer Genomics Cloud (CGC; www.cancergenomicscloud.org) enables researchers to rapidly access and collaborate on massive public cancer genomic datasets, including The Cancer Genome Atlas. It provides secure on-demand access to data
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d0d450966bfc1e26c595c5595ebf1ab8
https://doi.org/10.1158/0008-5472.can-17-0387
https://doi.org/10.1158/0008-5472.can-17-0387
Publikováno v:
IEEE/ACM Transactions on Computational Biology and Bioinformatics. 14:749-761
Metagenomics involves the analysis of genomes of microorganisms sampled directly from their environment. Next Generation Sequencing allows a high-throughput sampling of small segments from genomes in the metagenome to generate reads. To study the pro
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2d5abc081a8e76dbec57546383add37d
https://doi.org/10.1109/tcbb.2016.2563422
https://doi.org/10.1109/tcbb.2016.2563422
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 15, Iss, Pp 388-395 (2017)
Computational and Structural Biotechnology Journal
Computational and Structural Biotechnology Journal
We propose a random forest classifier for detecting rare variants from sequencing errors in Next Generation Sequencing (NGS) data from viral populations. The method utilizes counts of varying length of k-mers from the reads of a viral population to t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::545803491fcc5b572c5d4af9cadce2dc
https://doi.org/10.1016/j.csbj.2017.07.001
https://doi.org/10.1016/j.csbj.2017.07.001
Autor:
Nikola Tesic, Susanna Chen, Kevin Chen, Svetozar Nesic, Vojislav Varjacic, Xavier Bofill-De Ros, Minjie Jiang, Shuo Gu, Nikola Skundric, Dusan Randjelovic, Elizabeth H. Williams, Raunaq Malhotra
Publikováno v:
Bioinformatics. 35:1576-1578
Summary MicroRNAs (miRNAs) function as master regulators of gene expression. Recent studies demonstrate that miRNA isoforms (isomiRs) play a unique role in cancer development. Here, we present QuagmiR, the first cloud-based tool to analyze isomiRs fr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ff3d377febea8c4bc1bfb67db1138753
https://doi.org/10.1093/bioinformatics/bty843
https://doi.org/10.1093/bioinformatics/bty843