Zobrazeno 1 - 10
of 29
pro vyhledávání: '"Rasmus H. Fogh"'
Autor:
Luca G. Mureddu, Simon P. Skinner, Geerten W. Vuister, Timothy J. Ragan, Rasmus H. Fogh, Wayne Boucher
Publikováno v:
Journal of Biomolecular Nmr
NMR spectroscopy is an indispensably powerful technique for the analysis of biomolecules under ambient conditions, both for structural- and functional studies. However, in practice the complexity of the technique has often frustrated its application
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::95edd163e230454c84a019854c38523a
http://europepmc.org/articles/PMC5095159
http://europepmc.org/articles/PMC5095159
Autor:
Luca G. Mureddu, Simon P. Skinner, Wayne Boucher, Geerten W. Vuister, Rasmus H. Fogh, Timothy J. Ragan
NMR spectroscopy is an indispensably powerful technique for the analysis of biomolecules under ambient conditions, both for structural- and functional studies. However, in practice the complexity of the technique has often frustrated its application
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::17112a9af3ba80643ba979ecb3683253
https://europepmc.org/articles/PMC6828423/
https://europepmc.org/articles/PMC6828423/
Autor:
Jurgen F. Doreleijers, Pieter M. S. Hendrickx, Aleksandras Gutmanas, Geerten W. Vuister, Rasmus H. Fogh
Publikováno v:
Journal of Biomolecular NMR
ICT FP7 Publications Database
OpenAIRE
ICT FP7 Publications Database
OpenAIRE
Biomolecular structures at atomic resolution present a valuable resource for the understanding of biology. NMR spectroscopy accounts for 11 % of all structures in the PDB repository. In response to serious problems with the accuracy of some of the NM
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c07f76651324dfa0f10502b56cd36314
https://doi.org/10.1007/s10858-013-9750-x
https://doi.org/10.1007/s10858-013-9750-x
Autor:
Gert Vriend, Hendrik R. A. Jonker, Nuno Loureiro-Ferreira, Geerten W. Vuister, Sjoerd J. Vries, Christophe Schmitz, Wim F. Vranken, Johan van der Zwan, Lucio Ferella, Stefano Dal Pra, Daniel Franke, John Ionides, Harald Schwalbe, Chris A. E. M. Spronk, Rolf Boelens, Simone Badoer, Dmitri I. Svergun, Alexey Kikhney, Marc van Dijk, Anurag Bagaria, Peter Güntert, Victor Jaravine, M. Mazzucato, Tsjerk A. Wassenaar, Ivano Bertini, Ernest D. Laue, Antonio Rosato, E. Frizziero, Simonas Jurkša, M. Verlato, Jurgen F. Doreleijers, Torsten Herrmann, Alexandre M. J. J. Bonvin, Gijs van der Schot, Rasmus H. Fogh, Andrea Giachetti
Publikováno v:
Journal of Grid Computing
ICT FP7 Publications Database
JOURNAL OF GRID COMPUTING, 10(4), 743-767. Springer Netherlands
Journal of Grid Computing, Springer Verlag, 2012, 10 (4), pp.743-767
Wassenaar, T A, van Dijk, M, Loureiro-Ferreira, N, van der Schot, G, de Vries, S J, Schmitz, C, van der Zwan, J, Boelens, R, Giachetti, A, Ferella, L, Rosato, A, Bertini, I, Herrmann, T, Jonker, H R A, Bagaria, A, Jaravine, V, Guntert, P, Schwalbe, H, Vranken, W F, Doreleijers, J F, Vriend, G, Vuister, G W, Franke, D, Kikhney, A, Svergun, D I, Fogh, R H, Ionides, J, Laue, E D, Spronk, C, Jurksa, S, Verlato, M, Badoer, S, Dal Pra, S, Mazzucato, M, Frizziero, E & Bonvin, A M J J 2012, ' WeNMR: Structural Biology on the Grid ', JOURNAL OF GRID COMPUTING, vol. 10, no. 4, pp. 743-767 . https://doi.org/10.1007/s10723-012-9246-z
ICT FP7 Publications Database
JOURNAL OF GRID COMPUTING, 10(4), 743-767. Springer Netherlands
Journal of Grid Computing, Springer Verlag, 2012, 10 (4), pp.743-767
Wassenaar, T A, van Dijk, M, Loureiro-Ferreira, N, van der Schot, G, de Vries, S J, Schmitz, C, van der Zwan, J, Boelens, R, Giachetti, A, Ferella, L, Rosato, A, Bertini, I, Herrmann, T, Jonker, H R A, Bagaria, A, Jaravine, V, Guntert, P, Schwalbe, H, Vranken, W F, Doreleijers, J F, Vriend, G, Vuister, G W, Franke, D, Kikhney, A, Svergun, D I, Fogh, R H, Ionides, J, Laue, E D, Spronk, C, Jurksa, S, Verlato, M, Badoer, S, Dal Pra, S, Mazzucato, M, Frizziero, E & Bonvin, A M J J 2012, ' WeNMR: Structural Biology on the Grid ', JOURNAL OF GRID COMPUTING, vol. 10, no. 4, pp. 743-767 . https://doi.org/10.1007/s10723-012-9246-z
International audience; The WeNMR (http://www.wenmr.eu) project is a European Union funded international effort to streamline and automate analysis of Nuclear Magnetic Resonance (NMR) and Small Angle X-Ray scattering (SAXS) imaging data for atomic an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3e25dff8be83b445b290647d65bfba7d
https://doi.org/10.1007/s10723-012-9246-z
https://doi.org/10.1007/s10723-012-9246-z
Autor:
Barth-Jan van Rossum, Frank Eisenmenger, Wayne Boucher, Ernest D. Laue, Hartmut Oschkinat, Benjamin Bardiaux, Tim J. Stevens, Rasmus H. Fogh, Victoria A. Higman
Publikováno v:
Journal of Biomolecular Nmr
Journal of biomolecular NMR, 51(4): 437–447
Journal of biomolecular NMR, 51(4): 437–447
Solid-state magic-angle-spinning (MAS) NMR of proteins has undergone many rapid methodological developments in recent years, enabling detailed studies of protein structure, function and dynamics. Software development, however, has not kept pace with
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::717c8977aa1728b1ea6cda91d2cef733
https://doi.org/10.1007/s10858-011-9569-2
https://doi.org/10.1007/s10858-011-9569-2
Autor:
Rasmus H. Fogh, Wayne Boucher, John M.C. Ionides, Wim F. Vranken, Tim J. Stevens, Ernest D. Laue
Publikováno v:
Journal of Integrative Bioinformatics, Vol 7, Iss 3, Pp 112-134 (2010)
SummaryIn recent years the amount of biological data has exploded to the point where much useful information can only be extracted by complex computational analyses. Such analyses are greatly facilitated by metadata standards, both in terms of the ab
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f2ea9cb426044266f9fe95cd7be8d6ad
https://doaj.org/article/db77293753614348b1baced2ec0143a3
https://doaj.org/article/db77293753614348b1baced2ec0143a3
Autor:
Alessio Ceroni, Wim F. Vranken, Stuart M. Haslam, Hildegard Geyer, Rudolf Geyer, Pauline M. Rudd, Ana Ardá Freire, John Ionides, Martin Frank, Matthew Campbell, Anne Dell, Beat Ernst, Raymond A. Dwek, Thomas Lütteke, Kai Maass, Göran Widmalm, Rasmus H. Fogh, Claus Wilhelm Von Der Lieth, Dennis Blank, David Damerell, Roland Stenutz, William E. Hull, Louise Royle, Mathew J. Harrison, Siegfried Schloissnig, Jimmy Rosen, Bas R. Leeflang, Kim Henrick, Johannis P. Kamerling, Magnus Lundborg, Hiren J. Joshi, Anthony Merry, René Ranzinger, Stefan Herget
Publikováno v:
Glycobiology
The EUROCarbDB project is a design study for a technical framework, which provides sophisticated, freely accessible, open-source informatics tools and databases to support glycobiology and glycomic research. EUROCarbDB is a relational database contai
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e5fde44f74bfbe7ecd8efd390a0c657b
http://europepmc.org/articles/PMC3055595
http://europepmc.org/articles/PMC3055595
Autor:
Christopher J. Penkett, Eldon L. Ulrich, Kim Henrick, Aleksandras Gutmanas, G. Jawahar Swaminathan, Steve Mading, Gerard J. Kleywegt, Tim J. Stevens, Sameer Velankar, Glen van Ginkel, Wim F. Vranken, Rasmus H. Fogh
Publikováno v:
Journal of Biomolecular Nmr
We present a suite of software for the complete and easy deposition of NMR data to the PDB and BMRB. This suite uses the CCPN framework and introduces a freely downloadable, graphical desktop application called CcpNmr Entry Completion Interface (ECI)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::69978720869062026c164e824628232d
https://doi.org/10.1007/s10858-010-9439-3
https://doi.org/10.1007/s10858-010-9439-3
Autor:
Timothy J, Ragan, Rasmus H, Fogh, Roberto, Tejero, Wim, Vranken, Gaetano T, Montelione, Antonio, Rosato, Geerten W, Vuister
Publikováno v:
Journal of Biomolecular Nmr
We performed a comprehensive structure validation of both automated and manually generated structures of the 10 targets of the CASD-NMR-2013 effort. We established that automated structure determination protocols are capable of reliably producing str
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::b785ba17c16c86a1f1488f4e5e54ed56
https://pubmed.ncbi.nlm.nih.gov/26032236
https://pubmed.ncbi.nlm.nih.gov/26032236
Autor:
John Ionides, Anne Pajon, Tim J. Stevens, Eldon L. Ulrich, John L. Markley, Miguel Llinás, Wayne Boucher, Rasmus H. Fogh, Ernest D. Laue, Wim F. Vranken
Publikováno v:
Proteins: Structure, Function, and Bioinformatics. 59:687-696
To address data management and data exchange problems in the nuclear magnetic resonance (NMR) community, the Collaborative Computing Project for the NMR community (CCPN) created a "Data Model" that describes all the different types of information nee
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::59e400c50ac1d3c870bec1c9d4fdfb72
https://doi.org/10.1002/prot.20449
https://doi.org/10.1002/prot.20449