Evolutionary interplay between sister cytochrome P450 genes shapes plasticity in plant metabolism

Autor: Zhenhua Liu, Raquel Tavares, Evan S. Forsythe, François André, Raphaël Lugan, Gabriella Jonasson, Stéphanie Boutet-Mercey, Takayuki Tohge, Mark A. Beilstein, Danièle Werck-Reichhart, Hugues Renault

Publikováno v: Nature Communications, Vol 7, Iss 1, Pp 1-10 (2016)

Genes in the cytochrome P450 family have evolved a wide range of functions. Here, Liu et al. reconstruct the evolution of the P450 genes CYP98A8 and CYP98A9in the Brassicales, revealing a complex history of retrotransposition, tandem duplication and

Externí odkaz: https://doaj.org/article/8671bf477f8d4bbd9166e5cd90400872

Metabotyping: A New Approach to Investigate Rapeseed (Brassica napus L.) Genetic Diversity in the Metabolic Response to Clubroot Infection

Autor: Geoffrey Wagner, Sophie Charton, Christine Lariagon, Anne Laperche, Raphaël Lugan, Julie Hopkins, Pierre Frendo, Alain Bouchereau, Régine Delourme, Antoine Gravot, Maria J. Manzanares-Dauleux

Publikováno v: Molecular Plant-Microbe Interactions, Vol 25, Iss 11, Pp 1478-1491 (2012)

Clubroot disease affects all Brassicaceae spp. and is caused by the obligate biotroph pathogen Plasmodiophora brassicae. The development of galls on the root system is associated with the establishment of a new carbon metabolic sink. Here, we aimed t

Externí odkaz: https://doaj.org/article/b8f70f748ebe40e2bb818a3a04b3c08f

Algorithmic Learning for Auto-deconvolution of GC-MS Data to Enable Molecular Networking within GNPS

Autor: Kelem Gashu, Madeleine Ernst, Mélissa Nothias Esposito, Kirill Veselkov, Michael M. Meijler, Robert A. Quinn, Gaud Dervilly, Audrey Poirier, Katherine N. Maloney, tzhak MizrahiI, Chao Song, Thomas O. Metz, Roman S. Borisov, Rob Knight, Mabel Gonzalez, Roxana Coras, Amina Bouslimani, Chiara Carazzone, Vasilis Vasiliou, Alexander A. Aksenov, Wout Bittremieux, Yann Guitton, Daniel Petras, Zheng Zhang, Larisa N. Kulikova, Robin Schmid, Ilaria Belluomo, James T. Morton, Sneha P. Couvillion, Brooke Anderson, Carrie D. Nicora, Kenneth L. Jones, S. Prévost, Sophie L. F. Doran, Louis-Félix Nothias, Dennis Veselkov, Erika M. Zink, Bruno Le Bizec, Andrea M. Smania, Chris Callewaert, Justin J. J. van der Hooft, Rachel Gregor, Pauline Le Boulch, Alexey V. Melnik, Adolfo Amézquita, Biswapriya B. Misra, Noga Sikron Persi, Mingxun Wang, Raphaël Lugan, Rachel Dutton, Morgan Panitchpakdi, Pieter C. Dorrestein, Meagan C. Burnet, Elizabeth Humston Fulmer, Ivan Laponogov, George B. Hanna, Viatcheslav B. Artaev, Kathleen Dorrestein, Aaron Fait, Andrea Georgina Albarracín Orio, Stav Eyal

Publikováno v: bioRxiv

Gas chromatography-mass spectrometry (GC-MS) represents an analytical technique with significant practical societal impact. Spectral deconvolution is an essential step for interpreting GC-MS data. No public GC-MS repositories that also enable reposit

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::178962b4d09dd2517983d7aea490ebf6
https://hal.archives-ouvertes.fr/hal-03173091

Inheritance of Secondary Metabolites and Gene Expression Related to Tomato Fruit Quality

Autor: Estelle Bineau, José Luis Rambla, Renaud Duboscq, Marie-Noëlle Corre, Frédérique Bitton, Raphaël Lugan, Antonio Granell, Clémence Plissonneau, Mathilde Causse

Publikováno v: International Journal of Molecular Sciences
International Journal of Molecular Sciences, 2022, 23 (11), pp.6163. ⟨10.3390/ijms23116163⟩
International Journal of Molecular Sciences; Volume 23; Issue 11; Pages: 6163
Repositori Universitat Jaume I
Universitat Jaume I

Flavour and nutritional quality are important goals for tomato breeders. This study aimed to shed light upon transgressive behaviors for fruit metabolic content. We studied the metabolic contents of 44 volatile organic compounds (VOCs), 18 polyphenol

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f9ca9e659c2c30269318e84fc3784e45
https://doi.org/10.3390/ijms23116163

Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data

Autor: Ilaria Belluomo, Morgan Panitchpakdi, Aleksandr Smirnov, Mélissa Nothias-Esposito, Alexey V. Melnik, Gaud Dervilly, Rachel J. Dutton, Adolfo Amézquita, Vasilis Vasiliou, Zheng Zhang, Daniel Petras, Carrie D. Nicora, Audrey Poirier, James T. Morton, Ivan Laponogov, George B. Hanna, Sneha P. Couvillion, Biswapriya B. Misra, Robin Schmid, Wout Bittremieux, Raphaël Lugan, Brooke A. Anderson, Yann Guitton, Chris Callewaert, Kenneth L. Jones, Robert A. Quinn, Rob Knight, Larisa N. Kulikova, Itzhak Mizrahi, Erika M. Zink, Mabel Gonzalez, Sophie L. F. Doran, Rachel Gregor, Pauline Le Boulch, Kelem Gashu, Xiuxia Du, Michael M. Meijler, Kirill Veselkov, Chao Song, Elizabeth Humston-Fulmer, Noga Sikron Persi, Justin J. J. van der Hooft, Dennis Veselkov, Monica Guma, Kathleen Dorrestein, Saleh Alseekh, Roxana Coras, Chiara Carazzone, Thomas O. Metz, Aaron Fait, Andrea Georgina Albarracín Orio, Alexander A. Aksenov, Jose U. Scher, Andrea M. Smania, Bruno Le Bizec, Stav Eyal, Dinesh Kumar Barupal, Pieter C. Dorrestein, Alisdair R. Fernie, Reza Mirnezami, S. Prévost, Louis-Félix Nothias, Meagan C. Burnet, Viatcheslav B. Artaev, Mingxun Wang, Katherine N. Maloney, Julia Manasson, Madeleine Ernst, Roman S. Borisov, Amina Bouslimani

Publikováno v: Nat Biotechnol
Nature biotechnology
Aksenov, Alexander A., Laponogov, Ivan, Zhang, Zheng, Doran, Sophie L. F., Belluomo, Ilaria, Veselkov, Dennis, Bittremieux, Wout, Nothias, Louis Felix, Nothias-Esposito, Mélissa, Maloney, Katherine N., Misra, Biswapriya B., Melnik, Alexey V., Smirnov, Aleksandr, Du, Xiuxia, Jones, Kenneth L., Dorrestein, Kathleen, Panitchpakdi, Morgan, Ernst, Madeleine, van der Hooft, Justin J. J., Gonzalez, Mabel, Carazzone, Chiara, Amézquita, Adolfo, Callewaert, Chris, Morton, James T., Quinn, Robert A., Bouslimani, Amina, Orio, Andrea Albarracín, Petras, Daniel, Smania, Andrea M., Couvillion, Sneha P., Burnet, Meagan C., Nicora, Carrie D., Zink, Erika, Metz, Thomas O., Artaev, Viatcheslav, Humston-Fulmer, Elizabeth, Gregor, Rachel, Meijler, Michael M., Mizrahi, Itzhak, Eyal, Stav, Anderson, Brooke, Dutton, Rachel, Lugan, Raphaël, Boulch, Pauline Le, Guitton, Yann, Prevost, Stephanie, Poirier, Audrey, Dervilly, Gaud, Le Bizec, Bruno, Fait, Aaron, Persi, Noga Sikron, Song, Chao, Gashu, Kelem, Coras, Roxana, Guma, Monica, Manasson, Julia, Scher, Jose U., Barupal, Dinesh Kumar, Alseekh, Saleh, Fernie, Alisdair R., Mirnezami, Reza, Vasiliou, Vasilis, Schmid, Robin, Borisov, Roman S., Kulikova, Larisa N., Knight, Rob, Wang, Mingxun, Hanna, George B., Dorrestein, Pieter C. and Veselkov, Kirill (2021) Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data. Nature Biotechnology, 39 (2). ISSN 1087-0156
Nature Biotechnology
Nature Biotechnology, 39(2), 169-173
Nature Biotechnology, Nature Publishing Group, 2021, 39 (2), pp.169-173. ⟨10.1038/s41587-020-0700-3⟩
Nature Biotechnology 39 (2021) 2
Nature biotechnology, vol 39, iss 2

We engineered a machine learning approach, MSHub, to enable auto-deconvolution of gas chromatography–mass spectrometry (GC–MS) data. We then designed workflows to enable the community to store, process, share, annotate, compare and perform molecu

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e1ff89483759269c68c13571b23db181
http://hdl.handle.net/10044/1/84598