Zobrazeno 1 - 10
of 18
pro vyhledávání: '"Ramon A, van der Valk"'
Publikováno v:
Frontiers in Microbiology, Vol 14 (2023)
In archaea, histones play a role in genome compaction and are involved in transcription regulation. Whereas archaeal histones bind DNA without sequence specificity, they bind preferentially to DNA containing repeats of alternating A/T and G/C motifs.
Externí odkaz:
https://doaj.org/article/5b0b41d6b1564249a77384b1633019b8
Autor:
Ramon A van der Valk, Jocelyne Vreede, Liang Qin, Geri F Moolenaar, Andreas Hofmann, Nora Goosen, Remus T Dame
Publikováno v:
eLife, Vol 6 (2017)
Bacteria frequently need to adapt to altered environmental conditions. Adaptation requires changes in gene expression, often mediated by global regulators of transcription. The nucleoid-associated protein H-NS is a key global regulator in Gram-negati
Externí odkaz:
https://doaj.org/article/7e8de8306837484288f8eca19e55465f
Autor:
Hugo van Ingen, Monika Timmer, Mandy Erkelens, John van Noort, Bram Henneman, Thomas B. Brouwer, Nancy C. S. Kirolos, Ramon A van der Valk, Clara van Emmerik, Gert-Jan A. J. T. Kuijntjes, Remus T. Dame
Publikováno v:
Biophysical Journal, 120(3), 317a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6b5c365fc917d511a30968fbe3a85af4
https://www.sciencedirect.com/science/article/pii/S000634952032912X?via=ihub
https://www.sciencedirect.com/science/article/pii/S000634952032912X?via=ihub
Autor:
Daniel R Hron, Ramon A van der Valk, Liang Qin, Beth A Boudreau, Remus T. Dame, Robert Landick, Matthew V Kotlajich
Publikováno v:
Nucleic Acids Research
Nucleic Acids Research, 46(11), 5525-5546
Nucleic Acids Research, 46(11), 5525-5546
In enterobacteria, AT-rich horizontally acquired genes, including virulence genes, are silenced through the actions of at least three nucleoid-associated proteins (NAPs): H-NS, StpA and Hha. These proteins form gene-silencing nucleoprotein filaments
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::62cffaaa2610dfaed8a9e29e5b9e59aa
https://doi.org/10.1093/nar/gky265
https://doi.org/10.1093/nar/gky265
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 1837
DNA looping is important for genome organization in all domains of life. The basis of DNA loop formation is the bridging of two separate DNA double helices. Detecting DNA bridge formation generally involves the use of complex single-molecule techniqu
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::ed8334c3c901300f2292ea9d2562b608
https://pubmed.ncbi.nlm.nih.gov/30109613
https://pubmed.ncbi.nlm.nih.gov/30109613
Publikováno v:
Scientific Reports
Liang, Y, van der Valk, R A, Dame, R T, Roos, W H & Wuite, G J L 2017, ' Probing the mechanical stability of bridged DNA-H-NS protein complexes by single-molecule AFM pulling ', Scientific Reports, vol. 7, no. 1, 15275 . https://doi.org/10.1038/s41598-017-15477-4
Scientific Reports, 7(1):15275. Nature Publishing Group
Scientific Reports, 7, 15275
Scientific Reports, Vol 7, Iss 1, Pp 1-8 (2017)
Liang, Y, van der Valk, R A, Dame, R T, Roos, W H & Wuite, G J L 2017, ' Probing the mechanical stability of bridged DNA-H-NS protein complexes by single-molecule AFM pulling ', Scientific Reports, vol. 7, no. 1, 15275 . https://doi.org/10.1038/s41598-017-15477-4
Scientific Reports, 7(1):15275. Nature Publishing Group
Scientific Reports, 7, 15275
Scientific Reports, Vol 7, Iss 1, Pp 1-8 (2017)
Atomic force microscopy (AFM) has proven to be a powerful tool for the study of DNA-protein interactions due to its ability to image single molecules at the nanoscale. However, the use of AFM in force spectroscopy to study DNA-protein interactions ha
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9b85ab8f919da36178d33bce405233cc
https://doi.org/10.1038/s41598-017-15477-4
https://doi.org/10.1038/s41598-017-15477-4
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 1624
Architectural DNA binding proteins are key to the organization and compaction of genomic DNA inside cells. Tethered Particle Motion (TPM) permits analysis of DNA conformation and detection of changes in conformation induced by such proteins at the si
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::bde8a735ea67e10369c202dfb4f077ed
https://pubmed.ncbi.nlm.nih.gov/28842881
https://pubmed.ncbi.nlm.nih.gov/28842881
Autor:
Peter L. Graumann, Dhruba K. Chattoraj, Druckerei Stückle, Zoya M. Petrushenko, Ramon A van der Valk, Philippe Rousseau, Andrew Travers, François Cornet, Stephen D. Bell, Viridiana Herrera, Jocelyne Vreede, Charles J. Dorman, Jörg Soppa, Georgi Muskhelishvili, Sonja Julia Messerschmidt, Valentin V. Rybenkov, Luise A.K. Kleine Borgmann, Estelle Crozat, Satz Mengensatzproduktion, Rachel Y. Samson, Remus T. Dame, Florian Fournes, Jyoti K. Jha, Hang Zhao, Revathy Ramachandran, Frédéric Crémazy, Torsten Waldminghaus
Publikováno v:
Journal of Molecular Microbiology and Biotechnology. 24:I-IV
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::29377cb4717ecdc04eddbba1ced1aba1
https://doi.org/10.1159/000370228
https://doi.org/10.1159/000370228
Publikováno v:
The Bacterial Nucleoid ISBN: 9781493970971
Architectural DNA binding proteins are key to the organization and compaction of genomic DNA inside cells. Tethered Particle Motion (TPM) permits analysis of DNA conformation and detection of changes in conformation induced by such proteins at the si
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::a3c50d62da18e8362f0a0a5cdd334ce5
https://doi.org/10.1007/978-1-4939-7098-8_11
https://doi.org/10.1007/978-1-4939-7098-8_11