Novel and reported compensatory mutations in rpoABC genes found in drug resistant tuberculosis outbreaks.

Autor: Conkle-Gutierrez D; Laboratory for Pathogenesis of Clinical Drug Resistance and Persistence, San Diego State University, San Diego, CA, United States., Ramirez-Busby SM; Laboratory for Pathogenesis of Clinical Drug Resistance and Persistence, San Diego State University, San Diego, CA, United States., Gorman BM; Laboratory for Pathogenesis of Clinical Drug Resistance and Persistence, San Diego State University, San Diego, CA, United States., Elghraoui A; Laboratory for Pathogenesis of Clinical Drug Resistance and Persistence, San Diego State University, San Diego, CA, United States., Hoffner S; Laboratory for Pathogenesis of Clinical Drug Resistance and Persistence, San Diego State University, San Diego, CA, United States.; Department of Global Public Health, Karolinska Institute, Stockholm, Sweden., Elmaraachli W; Division of Pulmonary, Critical Care, and Sleep Medicine, University of California, San Diego, San Diego, CA, United States., Valafar F; Laboratory for Pathogenesis of Clinical Drug Resistance and Persistence, San Diego State University, San Diego, CA, United States.

Publikováno v: Frontiers in microbiology [Front Microbiol] 2024 Jan 08; Vol. 14, pp. 1265390. Date of Electronic Publication: 2024 Jan 08 (Print Publication: 2023).

Exact mapping of Illumina blind spots in the Mycobacterium tuberculosis genome reveals platform-wide and workflow-specific biases.

Autor: Modlin SJ; Laboratory for Pathogenesis of Clinical Drug Resistance and Persistence, School of Public Health, San Diego State University, San Diego, CA 92182, USA., Robinhold C; Laboratory for Pathogenesis of Clinical Drug Resistance and Persistence, School of Public Health, San Diego State University, San Diego, CA 92182, USA., Morrissey C; Laboratory for Pathogenesis of Clinical Drug Resistance and Persistence, School of Public Health, San Diego State University, San Diego, CA 92182, USA., Mitchell SN; Laboratory for Pathogenesis of Clinical Drug Resistance and Persistence, School of Public Health, San Diego State University, San Diego, CA 92182, USA., Ramirez-Busby SM; Laboratory for Pathogenesis of Clinical Drug Resistance and Persistence, School of Public Health, San Diego State University, San Diego, CA 92182, USA., Shmaya T; Laboratory for Pathogenesis of Clinical Drug Resistance and Persistence, School of Public Health, San Diego State University, San Diego, CA 92182, USA., Valafar F; Laboratory for Pathogenesis of Clinical Drug Resistance and Persistence, School of Public Health, San Diego State University, San Diego, CA 92182, USA.

Publikováno v: Microbial genomics [Microb Genom] 2021 Mar; Vol. 7 (3). Date of Electronic Publication: 2021 Jan 27.

Publisher Correction: Genomic analysis of the emergence of drug-resistant strains of Mycobacterium tuberculosis in the Middle East.

Autor: Alyamani EJ; National Center for Biotechnology, King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia., Marcus SA; Department of Pathobiological Sciences, University of Wisconsin-Madison, Madison, WI, USA., Ramirez-Busby SM; Laboratory for Pathogenesis of Clinical Drug Resistance and Persistence, Biomedical Informatics Research Center, San Diego State University, San Diego, CA, USA., Hansen C; Department of Pathobiological Sciences, University of Wisconsin-Madison, Madison, WI, USA., Rashid J; Department of Pathobiological Sciences, University of Wisconsin-Madison, Madison, WI, USA., El-Kholy A; Clinical Pathology Department, Faculty of Medicine Cairo University, Cairo, Egypt., Spalink D; Department of Ecosystem Science and Management, Texas A&M University, College Station, TX, USA., Valafar F; Laboratory for Pathogenesis of Clinical Drug Resistance and Persistence, Biomedical Informatics Research Center, San Diego State University, San Diego, CA, USA., Almehdar HA; Department of Biology, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia., Jiman-Fatani AA; Department of Medical Microbiology and Parasitology, Faculty of Medicine, King Abdulaziz University, Jeddah, Saudi Arabia., Khiyami MA; National Center for Biotechnology, King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia., Talaat AM; Department of Pathobiological Sciences, University of Wisconsin-Madison, Madison, WI, USA. Adel.Talaat@wisc.edu.

Publikováno v: Scientific reports [Sci Rep] 2019 Dec 27; Vol. 9 (1), pp. 20268. Date of Electronic Publication: 2019 Dec 27.

A Multinational Analysis of Mutations and Heterogeneity in PZase, RpsA, and PanD Associated with Pyrazinamide Resistance in M/XDR Mycobacterium tuberculosis.

Autor: Ramirez-Busby SM; Biological and Medical Informatics Research Center, San Diego State University, San Diego, California, USA., Rodwell TC; Department of Medicine, University of California, San Diego, California, USA., Fink L; Biological and Medical Informatics Research Center, San Diego State University, San Diego, California, USA., Catanzaro D; Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas, USA., Jackson RL; Department of Medicine, University of California, San Diego, California, USA., Pettigrove M; Department of Medicine, University of California, San Diego, California, USA., Catanzaro A; Department of Medicine, University of California, San Diego, California, USA., Valafar F; Biological and Medical Informatics Research Center, San Diego State University, San Diego, California, USA. faramarz@sdsu.edu.

Publikováno v: Scientific reports [Sci Rep] 2017 Jun 19; Vol. 7 (1), pp. 3790. Date of Electronic Publication: 2017 Jun 19.

Novel katG mutations causing isoniazid resistance in clinical M. tuberculosis isolates.

Autor: Torres JN; Biological & Medical Informatics Research Center, San Diego State University , San Diego, CA 92182, USA., Paul LV; SA MRC Centre for TB Research, DST/NRF Centre of Excellence for Biomedical Tuberculosis Research, Division of Molecular Biology and Human Genetics, Stellenbosch University , Tygerberg, Cape Town 7505, South Africa., Rodwell TC; Department of Medicine, University of California , San Diego, La Jolla, CA 92093, USA., Victor TC; SA MRC Centre for TB Research, DST/NRF Centre of Excellence for Biomedical Tuberculosis Research, Division of Molecular Biology and Human Genetics, Stellenbosch University , Tygerberg, Cape Town 7505, South Africa., Amallraja AM; Biological & Medical Informatics Research Center, San Diego State University , San Diego, CA 92182, USA., Elghraoui A; Biological & Medical Informatics Research Center, San Diego State University , San Diego, CA 92182, USA., Goodmanson AP; Biological & Medical Informatics Research Center, San Diego State University , San Diego, CA 92182, USA., Ramirez-Busby SM; Biological & Medical Informatics Research Center, San Diego State University , San Diego, CA 92182, USA., Chawla A; Biological & Medical Informatics Research Center, San Diego State University , San Diego, CA 92182, USA., Zadorozhny V; Biological & Medical Informatics Research Center, San Diego State University , San Diego, CA 92182, USA., Streicher EM; SA MRC Centre for TB Research, DST/NRF Centre of Excellence for Biomedical Tuberculosis Research, Division of Molecular Biology and Human Genetics, Stellenbosch University , Tygerberg, Cape Town 7505, South Africa., Sirgel FA; SA MRC Centre for TB Research, DST/NRF Centre of Excellence for Biomedical Tuberculosis Research, Division of Molecular Biology and Human Genetics, Stellenbosch University , Tygerberg, Cape Town 7505, South Africa., Catanzaro D; Department of Biological Sciences, University of Arkansas , Fayetteville, AR, 72701, USA., Rodrigues C; P. D. Hinduja National Hospital & Medical Research Centre, Department of Microbiology , Veer Savarkar Marg, Mahim, Mumbai 400 016, India., Gler MT; Tropical Disease Foundation , Makati 1230, Philippines., Crudu V; Microbiology and Morphology Laboratory, Institute of Phthisiopneumology , Chisinau, MD 2001, Moldova., Catanzaro A; Department of Medicine, University of California , San Diego, La Jolla, CA 92093, USA., Valafar F; Biological & Medical Informatics Research Center, San Diego State University , San Diego, CA 92182, USA.

Publikováno v: Emerging microbes & infections [Emerg Microbes Infect] 2015 Jul; Vol. 4 (7), pp. e42. Date of Electronic Publication: 2015 Jul 15.