Zobrazeno 1 - 10
of 57
pro vyhledávání: '"Ramin Rad"'
Autor:
Ramin Rad, Koushik Srinivas Kothagal
Learn how to correctly utilize the most popular Object-Relational Mapping tool for your Enterprise applicationKey Features[•] Understand the internals of Hibernate and its architecture, and how it manages Entities, Events, Versioning, Filters, and
Autor:
Jonathon J. O’Brien, Meagan Gadzuk-Shea, Phillip M. Seitzer, Ramin Rad, Fiona E. McAllister, Devin K. Schweppe
Publikováno v:
Journal of Proteome Research. 22:334-342
Stochastic, intensity-based precursor isolation can result in isotopically enriched fragment ions. This problem is exacerbated for large peptides and stable isotope labeling experiments using deuterium or
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::efa069a3ac2ba38b2e6278ba46524915
https://doi.org/10.1021/acs.jproteome.2c00247
https://doi.org/10.1021/acs.jproteome.2c00247
Autor:
Brandon M. Gassaway, Jiaming Li, Ramin Rad, Julian Mintseris, Kyle Mohler, Tyler Levy, Mike Aguiar, Sean A. Beausoleil, Joao A. Paulo, Jesse Rinehart, Edward L. Huttlin, Steven P. Gygi
Publikováno v:
Nat Methods
Mass-spectrometry-based phosphoproteomics has become indispensable for understanding cellular signaling in complex biological systems. Despite the central role of protein phosphorylation, the field still lacks inexpensive, regenerable, and diverse ph
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a52469f1062cd0a7b82f7270dbfda982
https://europepmc.org/articles/PMC9847208/
https://europepmc.org/articles/PMC9847208/
Autor:
Mohammad-Javad Niazi, Ramin Abrishami, Parisa Shojaei, Seyed-Matin Sadeghi-Sokeh, Ramin Radmanesh
Publikováno v:
Journal of Pharmaceutical Care, Vol 12, Iss 3 (2024)
Background: In addition to being the most accessible medical center in the community, the pharmacy is a center for storing and providing medicines and cosmetics that are directly related to people's health. Therefore, observing environmental health i
Externí odkaz:
https://doaj.org/article/3eb2e9c0c1254aa69ef907df65350e74
Autor:
Jiaming Li, Steven P. Gygi, Julian Mintseris, Jeremy D. O’Connell, Devin K. Schweppe, Ramin Rad
Publikováno v:
Journal of Proteome Research. 20:591-598
Accurate assignment of monoisotopic peaks is essential for the identification of peptides in bottom-up proteomics. Misassignment or inaccurate attribution of peptidic ions leads to lower sensitivity and fewer total peptide identifications. In the pre
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::abec13e8b08d00e2dbda323e6478f8f6
https://doi.org/10.1021/acs.jproteome.0c00563
https://doi.org/10.1021/acs.jproteome.0c00563
Publikováno v:
J Am Soc Mass Spectrom
Sample multiplexing using isobaric tagging is a powerful strategy for proteome-wide protein quantification. One major caveat of isobaric tagging is ratio compression that results from the isolation, fragmentation, and quantification of coeluting, nea
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::13699088c6da0e03c4d49f1ec4e9a66d
https://doi.org/10.1021/jasms.0c00029
https://doi.org/10.1021/jasms.0c00029
Autor:
Joao A. Paulo, Graeme C. McAlister, Derek J. Bailey, Satendra Prasad, Devin K. Schweppe, Vlad Zabrouskov, José Navarrete-Perea, Mark P. Jedrychowski, Michael W. Belford, Susan E. Abbatiello, Ramin Rad, Eloy R Woulters, Jean-Jacques Dunyach, Steven P. Gygi, Romain Huguet
Publikováno v:
Analytical Chemistry. 91:4010-4016
Multiplexed, isobaric tagging methods are powerful techniques to increase throughput, precision, and accuracy in quantitative proteomics. The dynamic range and accuracy of quantitation, however, can be limited by coisolation of tag-containing peptide
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b6d92b9ba78c577693bc1f32d484bc37
https://doi.org/10.1021/acs.analchem.8b05399
https://doi.org/10.1021/acs.analchem.8b05399
Autor:
Rochelle Buffenstein, Matthew Kukurugya, Vladimir Jojic, Jonathon J. O’Brien, Nicole V Haste, Celeste M. Sandoval, Bryson Bennett, Vikram Narayan, Ramin Rad, Adam Baker, Yao Wong, Carmela Sidrauski, Baby Martin-McNulty, Fiona E. McAllister, Phillip Seitzer, Megan Smith, Chunlian Zhang, Ganesh Kolumam, Aleksandr Gaun
Isotopic labeling with deuterium oxide (D2O) is a common technique for estimatingin vivoprotein turnover, but its use has been limited by two long-standing problems: (1) identifying non-monoisotopic peptides; and (2) estimating protein turnover rates
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0c8b14a2c0f51ff25851e8a845e709cf
https://doi.org/10.1101/2020.11.10.377440
https://doi.org/10.1101/2020.11.10.377440
Autor:
Ramin Rad, Graeme C. McAlister, Brian K. Erickson, Devin K. Schweppe, Steven P. Gygi, Qing Yu, Wilhem Haas
Publikováno v:
J Proteome Res
Gas-phase fractionation enables better quantitative accuracy, improves signal-to-noise ratios, and increases sensitivity in proteomic analyses. However, traditional gas-phase enrichment, which relies upon a large continuous bin, results in suboptimal
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::708a7dff7f616a9a0c172614d3d7587f
https://pubmed.ncbi.nlm.nih.gov/31990573
https://pubmed.ncbi.nlm.nih.gov/31990573
Autor:
Sipei Fu, Laura Pontano Vaites, Joe R. Cannon, Alexandra Panov, Ramin Rad, J. Wade Harper, Joshua Pan, Gabriela Zarraga, Sanjukta Guha Thakurta, Arvene Golbazi, Stanley Tam, Raphael J. Bruckner, Edward L. Huttlin, Hannah Parzen, John Szpyt, Keegan Stricker, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Kurt Baltier, Melanie P. Gygi, Fana Gebreab, Eila Maenpaa, Alexandra Thornock, Steven P. Gygi, José Navarrete-Perea
SUMMARYThousands of interactions assemble proteins into modules that impart spatial and functional organization to the cellular proteome. Through affinity-purification mass spectrometry, we have created two proteome-scale, cell-line-specific interact
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0b92863dd46f2652ee366b11711fd786