Zobrazeno 1 - 10
of 2 114
pro vyhledávání: '"Rambaut A."'
Autor:
Brusselmans, Marius, Carvalho, Luiz Max, Hong, Samuel L., Gao, Jiansi, Matsen IV, Frederick A., Rambaut, Andrew, Lemey, Philippe, Suchard, Marc A., Dudas, Gytis, Baele, Guy
Modern phylogenetics research is often performed within a Bayesian framework, using sampling algorithms such as Markov chain Monte Carlo (MCMC) to approximate the posterior distribution. These algorithms require careful evaluation of the quality of t
Externí odkaz:
http://arxiv.org/abs/2402.11657
Autor:
L. Carnegie, J. T. McCrone, L. du Plessis, M. Hasan, M.Z. Ali, R. Begum, M.Z. Hassan, S. Islam, M.H. Rahman, A.S.M. Uddin, M.S. Sarker, T. Das, M. Hossain, M. Khan, M.H. Razu, A. Akram, S. Arina, E. Hoque, M.M.A. Molla, T. Nafisaa, P. Angra, A. Rambaut, S.T. Pullan, K.L. Osman, M.A. Hoque, P. Biswas, M.S. Flora, J. Raghwani, G. Fournié, M.A. Samad, S.C. Hill
Publikováno v:
Virology Journal, Vol 21, Iss 1, Pp 1-13 (2024)
Abstract Background Genomic epidemiology has helped reconstruct the global and regional movement of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). However, there is still a lack of understanding of SARS-CoV-2 spread in some of the worl
Externí odkaz:
https://doaj.org/article/32560375ce0c4e0ca71992cfb7bd2246
Autor:
Andrew Holtz, Johan Van Weyenbergh, Samuel L. Hong, Lize Cuypers, Áine O’Toole, Gytis Dudas, Marco Gerdol, Barney I. Potter, Francine Ntoumi, Claujens Chastel Mfoutou Mapanguy, Bert Vanmechelen, Tony Wawina-Bokalanga, Bram Van Holm, Soraya Maria Menezes, Katja Soubotko, Gijs Van Pottelbergh, Elke Wollants, Pieter Vermeersch, Ann-Sophie Jacob, Brigitte Maes, Dagmar Obbels, Veerle Matheeussen, Geert Martens, Jérémie Gras, Bruno Verhasselt, Wim Laffut, Carl Vael, Truus Goegebuer, Rob van der Kant, Frederic Rousseau, Joost Schymkowitz, Luis Serrano, Javier Delgado, Tom Wenseleers, Vincent Bours, Emmanuel André, Marc A. Suchard, Andrew Rambaut, Simon Dellicour, Piet Maes, Keith Durkin, Guy Baele
Publikováno v:
BMC Infectious Diseases, Vol 24, Iss 1, Pp 1-18 (2024)
Abstract We investigate the emergence, mutation profile, and dissemination of SARS-CoV-2 lineage B.1.214.2, first identified in Belgium in January 2021. This variant, featuring a 3-amino acid insertion in the spike protein similar to the Omicron vari
Externí odkaz:
https://doaj.org/article/e0f6914f63ac463b94c41b5682afba1e
Autor:
Crits-Christoph, Alexander, Levy, Joshua I., Pekar, Jonathan E., Goldstein, Stephen A., Singh, Reema, Hensel, Zach, Gangavarapu, Karthik, Rogers, Matthew B., Moshiri, Niema, Garry, Robert F., Holmes, Edward C., Koopmans, Marion P.G., Lemey, Philippe, Peacock, Thomas P., Popescu, Saskia, Rambaut, Andrew, Robertson, David L., Suchard, Marc A., Wertheim, Joel O., Rasmussen, Angela L., Andersen, Kristian G., Worobey, Michael, Débarre, Florence
Publikováno v:
In Cell 19 September 2024 187(19):5468-5482
Autor:
N. Raoult, L.-A. Edouard-Rambaut, N. Vuichard, V. Bastrikov, A. S. Lansø, B. Guenet, P. Peylin
Publikováno v:
Biogeosciences, Vol 21, Pp 1017-1036 (2024)
Predicting the responses of terrestrial ecosystem carbon to future global change strongly relies on our ability to model accurately the underlying processes at a global scale. However, terrestrial biosphere models representing the carbon and nitrogen
Externí odkaz:
https://doaj.org/article/ede8517a1cde4a40b314f3befe5831bf
Autor:
Agyei, Yaw, Beyers, Nulda, Bock, Peter, Bond, Virginia, Bwalya, Justin, Cori, Anne, Deventer, Anneen, Dunbar, Rory, El-Sadr, Wafaa, Emel, Lynda, Floyd, Sian, Griffith, Sam, Hargreaves, James, Hauck, Katharina, Headen, Tanette, Hoddinott, Graeme, James, Anelet, Jennings, Karen, Kanema, Sarah, Kosloff, Barry, Kruger, James, Kumar, Ramya, Macleod, David, Makola, Nozizwe, Mandla, Nomtha, Miller, Eric, Moore, Ayana, Mwenge, Lawrence, Noble, Heather, Phiri, Mwelwa, Pickles, Michael, Sabapathy, Kalpana, Sakala, Ephraim, Sauter, Rafael, Shanaube, Kwame, Silumesi, Andrew, Sista, Nirupama, Skalland, Tim, Smith, Peter, Thomas, Ranjeeta, Vermund, Sten, White, Rhonda, Wilson, Ethan, Yang, Blia, Yuhas, Krista, Bowden, Rory, Calvez, Vincent, Essex, Max, Grabowski, Kate, Gupta, Ravindra, Herbeck, Joshua, Kagaayi, Joseph, Kaleebu, Pontiano, Lingappa, Jairam, Moyo, Sikhulile, Novitsky, Vladimir, Ndung’u, Thumbi, Pillay, Deenan, Quinn, Thomas, Rambaut, Andrew, Seeley, Janet, Ssemwanga, Deogratius, Tanser, Frank, Wawer, Maria, Hall, Matthew, Golubchik, Tanya, Bonsall, David, Abeler-Dörner, Lucie, Limbada, Mohammed, Schaap, Ab, de Cesare, Mariateresa, MacIntyre-Cockett, George, Otecko, Newton, Probert, William, Ratmann, Oliver, Bulas Cruz, Ana, Piwowar-Manning, Estelle, Burns, David N, Cohen, Myron S, Donnell, Deborah J, Eshleman, Susan H, Simwinga, Musonda, Fidler, Sarah, Hayes, Richard, Ayles, Helen, Fraser, Christophe
Publikováno v:
In The Lancet Microbe January 2024 5(1):e62-e71
Reconstructing pathogen dynamics from genetic data as they become available during an outbreak or epidemic represents an important statistical scenario in which observations arrive sequentially in time and one is interested in performing inference in
Externí odkaz:
http://arxiv.org/abs/2002.00245
Akademický článek
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Autor:
Ji, Xiang, Zhang, Zhenyu, Holbrook, Andrew, Nishimura, Akihiko, Baele, Guy, Rambaut, Andrew, Lemey, Philippe, Suchard, Marc A.
Calculation of the log-likelihood stands as the computational bottleneck for many statistical phylogenetic algorithms. Even worse is its gradient evaluation, often used to target regions of high probability. Order ${\cal O}\hspace{-0.2em}\left( N \ri
Externí odkaz:
http://arxiv.org/abs/1905.12146
Autor:
Holbrook, Andrew, Lemey, Philippe, Baele, Guy, Dellicour, Simon, Brockmann, Dirk, Rambaut, Andrew, Suchard, Marc
Big Bayes is the computationally intensive co-application of big data and large, expressive Bayesian models for the analysis of complex phenomena in scientific inference and statistical learning. Standing as an example, Bayesian multidimensional scal
Externí odkaz:
http://arxiv.org/abs/1905.04582