Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum

Autor: Hass-Jacobus, Barbara, Futrell-Griggs, Montona, Abernathy, Brian, Westerman, Rick, Goicoechea, Jose-Luis, Stein, Joshua, Klein, Patricia, Hurwitz, Bonnie, Zhou, Bin, Rakhshan, Fariborz, Sanyal, Abhijit, Gill, Navdeep, Lin, Jer-Young, Walling, Jason, Luo, Mei, Ammiraju, Jetty, Kudrna, Dave, Kim, Hye, Ware, Doreen, Wing, Rod, Miguel, Phillip, Jackson, Scott

BACKGROUND:With the completion of the genome sequence for rice (Oryza sativa L.), the focus of rice genomics research has shifted to the comparison of the rice genome with genomes of other species for gene cloning, breeding, and evolutionary studies.

Externí odkaz: http://hdl.handle.net/10150/610398
http://arizona.openrepository.com/arizona/handle/10150/610398

Mapping Regulatory Elements Using Single-cell ATAC-Seq

Autor: Simon, Verna, Rakhshan, Fariborz, Potluri, Sandeep, Mazzone, Amelia, Li, Ying, Eckloff, Bruce, Cunningham, Julie, Maia, Alexandre Gaspar

Publikováno v: J Biomol Tech

The Medical Genome Facility Genome Analysis Core has successfully performed single-cell transcriptome experiments for more than 6 years. Using the Fluidigm C1 and 10x Genomics Chromium platforms, we have captured and labeled single cells from over 47

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmc_dedup___::212f4102527f880c0317d356f573406d
https://europepmc.org/articles/PMC7424855/

Quantitative miRNA Expression Analysis Using Fluidigm Microfluidics Dynamic Arrays

Autor: Lingle Wilma L, Zschunke Michael A, Schultz Debra A, Rakhshan Fariborz, Feddersen Rod M, Simon Vernadette A, Jang Jin, Kolbert Christopher P, Jen Jin

Publikováno v: BMC Genomics, Vol 12, Iss 1, p 144 (2011)

Abstract Background MicroRNAs (miRNAs) represent a growing class of small non-coding RNAs that are important regulators of gene expression in both plants and animals. Studies have shown that miRNAs play a critical role in human cancer and they can in

Externí odkaz: https://doaj.org/article/acdf5bd21e694db9b452cc4324833929

Novel late-onset Alzheimer disease loci variants associate with brain gene expression

Autor: Allen, Mariet, Zou, Fanggeng, Chai, High Seng, Younkin, Curtis S, Crook, Julia, Pankratz, V Shane, Carrasquillo, Minerva M, Rowley, Christopher N, Nair, Asha A, Middha, Sumit, Maharjan, Sooraj, Nguyen, Thuy, Ma, Li, Malphrus, Kimberly G, Palusak, Ryan, Lincoln, Sarah, Bisceglio, Gina, Georgescu, Constantin, Schultz, Debra, Rakhshan, Fariborz, Kolbert, Christopher P, Jen, Jin, Haines, Jonathan L, Mayeux, Richard, Pericak-Vance, Margaret A, Farrer, Lindsay A, Schellenberg, Gerard D, Petersen, Ronald C, Graff-Radford, Neill R, Dickson, Dennis W, Younkin, Steven G, Ertekin-Taner, Nilüfer, Alzheimer's Disease Genetics Consortium (ADGC), Apostolova, Liana G, Arnold, Steven E, Baldwin, Clinton T, Barber, Robert, Barmada, Michael M, Beach, Thomas, Beecham, Gary W, Beekly, Duane, Bennett, David A, Bigio, Eileen H, Bird, Thomas D, Blacker, Deborah, Boeve, Bradley F, Bowen, James D, Boxer, Adam, Burke, James R, Buros, Jacqueline, Buxbaum, Joseph D, Cairns, Nigel J, Cantwell, Laura B, Cao, Chuanhai, Carlson, Chris S, Carney, Regina M, Carroll, Steven L, Chui, Helena C, Clark, David G, Corneveaux, Jason, Cotman, Carl W, Crane, Paul K, Cruchaga, Carlos, Cummings, Jeffrey L, De Jager, Philip L, DeCarli, Charles, DeKosky, Steven T, Demirci, F Yesim, Diaz-Arrastia, Ramon, Dick, Malcolm, Dombroski, Beth A, Duara, Ranjan, Ellis, William D, Evans, Denis, Faber, Kelley M, Fallon, Kenneth B, Farlow, Martin R, Ferris, Steven, Foroud, Tatiana M, Frosch, Matthew, Galasko, Douglas R, Gallins, Paul J, Ganguli, Mary, Gearing, Marla, Geschwind, Daniel H, Ghetti, Bernardino, Gilbert, John R, Gilman, Sid, Giordani, Bruno, Glass, Jonathan D, Goate, Alison M, Green, Robert C, Growdon, John H, Hakonarson, Hakon, Hamilton, Ronald L, Hardy, John, Harrell, Lindy E, Head, Elizabeth, Honig, Lawrence S, Huentelman, Matthew J

Publikováno v: Neurology, vol 79, iss 3

ObjectiveRecent genome-wide association studies (GWAS) of late-onset Alzheimer disease (LOAD) identified 9 novel risk loci. Discovery of functional variants within genes at these loci is required to confirm their role in Alzheimer disease (AD). Singl

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::568f6a9ccf68160289393f0151c130b6
https://escholarship.org/uc/item/11358582

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