Zobrazeno 1 - 10
of 11
pro vyhledávání: '"Rajib Basak"'
Autor:
Nikolay Korolev, Anatoly Zinchenko, Aghil Soman, Qinming Chen, Sook Yi Wong, Nikolay V. Berezhnoy, Rajib Basak, Johan R. C. van der Maarel, John van Noort, Lars Nordenskiöld
Publikováno v:
Scientific Reports, Vol 12, Iss 1, Pp 1-17 (2022)
Abstract Large topologically associated domains (TADs) contain irregularly spaced nucleosome clutches, and interactions between such clutches are thought to aid the compaction of these domains. Here, we reconstituted TAD-sized chromatin fibers contai
Externí odkaz:
https://doaj.org/article/84b90e5eb555443c8b883fe2cdd2d51f
Autor:
Indresh Yadav, William Rosencrans, Rajib Basak, Jeroen A. van Kan, Johan R. C. van der Maarel
Publikováno v:
Physical Review Research, Vol 2, Iss 1, p 013294 (2020)
The intramolecular dynamics of double-stranded DNA confined to a long, straight, and rectangular channel with a cross-sectional diameter of 125 nm (two times the persistence length) is measured with fluorescence microscopy. The derived intermediate d
Externí odkaz:
https://doaj.org/article/9713ddf341d648948f8c65a0fc3b959b
Autor:
Rajib, Basak, Indresh, Yadav, Véronique, Arluison, Jeroen A, van Kan, Johan R C, van der Maarel
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2538
Nanofluidics is an emerging methodology to investigate single biomacromolecules without functionalization and/or attachment of the molecules to a substrate. In conjunction with fluorescence microscopy, it can be used to investigate structural and dyn
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::af0c77ac6466bd53662af2543063a757
https://pubmed.ncbi.nlm.nih.gov/35951308
https://pubmed.ncbi.nlm.nih.gov/35951308
Autor:
Peiyan Yan, Jeroen Anton van Kan, Indresh Yadav, Johan R. C. van der Maarel, Véronique Arluison, Rajib Basak
Publikováno v:
The Journal of Physical Chemistry Letters. 11:8424-8429
Protein transport on DNA is at the core of the machinery of life. Here we investigated the influence of DNA internal motion on the mobility of Hfq, which is involved in several aspects of nucleic acid metabolism and is one of the nucleoid-associated
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::97dbb8791f4f18ec9d706f7d539f7259
https://doi.org/10.1021/acs.jpclett.0c02251
https://doi.org/10.1021/acs.jpclett.0c02251
Autor:
Chuan Jie Tan, Rajib Basak, Indresh Yadav, Jeroen A. van Kan, Véronique Arluison, Johan R. C. van der Maarel
Publikováno v:
The journal of physical chemistry. B. 126(7)
The mobility of protein is fundamental in the machinery of life. Here, we have investigated the effect of DNA binding in conjunction with DNA segmental fluctuation (internal motion) of the bacterial Hfq master regulator devoid of its amyloid C-termin
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::587a8c62c2c90dbeacb1f779d5f22bde
https://pubmed.ncbi.nlm.nih.gov/35166115
https://pubmed.ncbi.nlm.nih.gov/35166115
Autor:
Rajib Basak, Indresh Yadav, Véronique Arluison, Jeroen A. van Kan, Johan R. C. van der Maarel
Publikováno v:
Methods in Molecular Biology ISBN: 9781071625286
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::6e6981c8fa5a74d2522979d2afb21955
https://doi.org/10.1007/978-1-0716-2529-3_20
https://doi.org/10.1007/978-1-0716-2529-3_20
Autor:
Rajib Basak, Indresh Yadav, William M. Rosencrans, Jeroen A. van Kan, Johan R. C. van der Maarel
Publikováno v:
Physical Review Research. 2
This paper studies DNA dynamics to understand its response to confinement. Major slowing down of segmental fluctuation is observed once the molecule gets stretched. The authors establish a scaling law for the longest relaxation time within the framew
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::2ff62134722e6a8ba4a96c10a597189f
https://doi.org/10.1103/physrevresearch.2.013294
https://doi.org/10.1103/physrevresearch.2.013294
Autor:
Sarfraz Qureshi, S. Thameem Dheen, Ce Zhang, Neelima Gupta, Fan Liu, Renko de Vries, Jeroen A. van Kan, Johan R. C. van der Maarel, Rajib Basak
Publikováno v:
Journal of Physical Chemistry Letters, 10(3), 316-321
Journal of Physical Chemistry Letters 10 (2019) 3
Journal of Physical Chemistry Letters 10 (2019) 3
Genetic profiling would benefit from linearization of ssDNA through the exposure of the unpaired bases to gene-targeting probes. This is compromised by ssDNA's high flexibility and tendency to form self-annealed structures. Here, we demonstrate that
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1b8393081d57403c82a52bf5eeee9fe0
https://pubmed.ncbi.nlm.nih.gov/30615463
https://pubmed.ncbi.nlm.nih.gov/30615463
Autor:
Ranjini Bandyopadhyay, Rajib Basak
Publikováno v:
Langmuir. 29:4350-4356
Three drugs, Ibuprofen, Aspirin and Erythromycin, are encapsulated in spherical Pluronic F127 micelles. The shapes and the size distributions of the micelles in dilute, aqueous solutions, with and without drugs, are ascertained using cryo- Scanning E
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7e5e6d6f3bcddae64a26ed11a66be7ab
https://doi.org/10.1021/la304836e
https://doi.org/10.1021/la304836e
Autor:
Rajib Basak, Ranjini Bandyopadhyay
Publikováno v:
Soft matter. 10(37)
When calcium salts are added to an aqueous solution of polysaccharide pectin, ionic cross-links form between pectin chains, giving rise to a gel network in dilute solution. In this work, dynamic light scattering (DLS) is employed to study the microsc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::21b48d9c6bc792bd08484593b01cd4e1
https://pubmed.ncbi.nlm.nih.gov/25160564
https://pubmed.ncbi.nlm.nih.gov/25160564