Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics.

Autor: Grones C; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.; VIB Centre for Plant Systems Biology, Ghent 9052, Belgium., Eekhout T; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.; VIB Centre for Plant Systems Biology, Ghent 9052, Belgium.; VIB Single Cell Core Facility, Ghent 9052, Belgium., Shi D; Centre for Organismal Studies, Heidelberg University, 69120 Heidelberg, Germany.; Institute of Biochemistry and Biology, University of Potsdam, 14476 Potsdam, Germany., Neumann M; Institute of Biology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany., Berg LS; Institute of Plant Sciences, University of Bern, 3012 Bern, Switzerland., Ke Y; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.; VIB Centre for Plant Systems Biology, Ghent 9052, Belgium., Shahan R; Department of Biology, Duke University, Durham, NC 27708, USA.; Howard Hughes Medical Institute, Duke University, Durham, NC 27708, USA., Cox KL Jr; Donald Danforth Plant Science Center, St. Louis, MO 63132, USA., Gomez-Cano F; Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA., Nelissen H; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.; VIB Centre for Plant Systems Biology, Ghent 9052, Belgium., Lohmann JU; Centre for Organismal Studies, Heidelberg University, 69120 Heidelberg, Germany., Giacomello S; SciLifeLab, Department of Gene Technology, KTH Royal Institute of Technology, 17165 Solna, Sweden., Martin OC; Universities of Paris-Saclay, Paris-Cité and Evry, CNRS, INRAE, Institute of Plant Sciences Paris-Saclay, Gif-sur-Yvette 91192, France., Cole B; DOE-Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA., Wang JW; National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences (CEMPS), Institute of Plant Physiology and Ecology (SIPPE), Chinese Academy of Sciences (CAS), Shanghai 200032, China., Kaufmann K; Institute of Biology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany., Raissig MT; Institute of Plant Sciences, University of Bern, 3012 Bern, Switzerland., Palfalvi G; Department of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, 50829 Cologne, Germany., Greb T; Centre for Organismal Studies, Heidelberg University, 69120 Heidelberg, Germany., Libault M; Division of Plant Science and Technology, Interdisciplinary Plant Group, College of Agriculture, Food, and Natural Resources, University of Missouri-Columbia, Columbia, MO 65201, USA., De Rybel B; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.; VIB Centre for Plant Systems Biology, Ghent 9052, Belgium.

Publikováno v: The Plant cell [Plant Cell] 2024 Mar 29; Vol. 36 (4), pp. 812-828.

Regulation of hair cell and stomatal size by a hair cell-specific peroxidase in the grass Brachypodium distachyon.

Autor: Nunes TDG; Centre for Organismal Studies Heidelberg, Heidelberg University, 69120 Heidelberg, Germany., Berg LS; Institute of Plant Sciences, University of Bern, 3013 Bern, Switzerland., Slawinska MW; Centre for Organismal Studies Heidelberg, Heidelberg University, 69120 Heidelberg, Germany., Zhang D; Centre for Organismal Studies Heidelberg, Heidelberg University, 69120 Heidelberg, Germany., Redt L; Centre for Organismal Studies Heidelberg, Heidelberg University, 69120 Heidelberg, Germany., Sibout R; UR1268 BIA (Biopolymères Interactions Assemblages), INRAE, Nantes 44300, France., Vogel JP; DOE Joint Genome Institute, Berkeley, CA 94720, USA; University of California, Berkeley, Berkeley, CA 94720, USA., Laudencia-Chingcuanco D; U.S. Department of Agriculture, Western Regional Research Center, Albany, CA 94710, USA., Jesenofsky B; Centre for Organismal Studies Heidelberg, Heidelberg University, 69120 Heidelberg, Germany., Lindner H; Centre for Organismal Studies Heidelberg, Heidelberg University, 69120 Heidelberg, Germany; Institute of Plant Sciences, University of Bern, 3013 Bern, Switzerland., Raissig MT; Centre for Organismal Studies Heidelberg, Heidelberg University, 69120 Heidelberg, Germany; Institute of Plant Sciences, University of Bern, 3013 Bern, Switzerland. Electronic address: michael.raissig@unibe.ch.

Publikováno v: Current biology : CB [Curr Biol] 2023 May 08; Vol. 33 (9), pp. 1844-1854.e6. Date of Electronic Publication: 2023 Apr 21.

Opposite polarity programs regulate asymmetric subsidiary cell divisions in grasses.

Autor: Zhang D; Centre for Organismal Studies Heidelberg, Heidelberg University, Heidelberg, Germany., Spiegelhalder RP; Institute of Plant Sciences, University of Bern, Bern, Switzerland., Abrash EB; Department of Biology, Stanford University, Stanford, United States., Nunes TDG; Centre for Organismal Studies Heidelberg, Heidelberg University, Heidelberg, Germany., Hidalgo I; Centre for Organismal Studies Heidelberg, Heidelberg University, Heidelberg, Germany., Anleu Gil MX; Department of Biology, Stanford University, Stanford, United States., Jesenofsky B; Centre for Organismal Studies Heidelberg, Heidelberg University, Heidelberg, Germany., Lindner H; Centre for Organismal Studies Heidelberg, Heidelberg University, Heidelberg, Germany.; Institute of Plant Sciences, University of Bern, Bern, Switzerland., Bergmann DC; Department of Biology, Stanford University, Stanford, United States.; Howard Hughes Medical Institute, Stanford University, Stanford, United States., Raissig MT; Centre for Organismal Studies Heidelberg, Heidelberg University, Heidelberg, Germany.; Institute of Plant Sciences, University of Bern, Bern, Switzerland.

Publikováno v: ELife [Elife] 2022 Dec 20; Vol. 11. Date of Electronic Publication: 2022 Dec 20.

The wild grass Brachypodium distachyon as a developmental model system.

Autor: Raissig MT; Centre for Organismal Studies Heidelberg, Heidelberg University, Heidelberg, Germany; Institute of Plant Sciences, University of Bern, Bern, Switzerland. Electronic address: michael.raissig@ips.unibe.ch., Woods DP; Department of Plant Sciences, University of California, Davis, CA, United States; Howard Hughes Medical Institute, Chevy Chase, MD, United States. Electronic address: dpwoods@ucdavis.edu.

Publikováno v: Current topics in developmental biology [Curr Top Dev Biol] 2022; Vol. 147, pp. 33-71. Date of Electronic Publication: 2022 Mar 14.

Editorial: Linking Stomatal Development and Physiology: From Stomatal Models to Non-model Species and Crops.

Autor: McAdam SAM; Purdue Center for Plant Biology, Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, United States., Chater CCC; Royal Botanic Gardens, Kew, Richmond, United Kingdom., Shpak ED; Department of Biochemistry, Cellular and Molecular Biology, University of Tennessee, Knoxville, Knoxville, TN, United States., Raissig MT; Centre for Organismal Studies Heidelberg, Heidelberg University, Heidelberg, Germany., Dow GJ; Molecular Plant Breeding, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland.

Publikováno v: Frontiers in plant science [Front Plant Sci] 2021 Sep 30; Vol. 12, pp. 743964. Date of Electronic Publication: 2021 Sep 30 (Print Publication: 2021).