Zobrazeno 1 - 10
of 499
pro vyhledávání: '"Rahmann Sven"'
Publikováno v:
Journal of Integrative Bioinformatics, Vol 7, Iss 3, Pp 28-38 (2010)
We investigated the problem of imprecisely determined prokaryotic transcription factor (TF) binding sites (TFBSs). We found that the identification and reinvestigation of questionable binding motifs may result in improved models of these motifs. Subs
Externí odkaz:
https://doaj.org/article/20f7203a1272460a8625e7eadc0ed319
Publikováno v:
Journal of Integrative Bioinformatics, Vol 5, Iss 2, Pp 21-34 (2008)
Background: A precise experimental identification of transcription factor binding motifs (TFBMs), accurate to a single base pair, is time-consuming and difficult. For several databases, TFBM annotations are extracted from the literature and stored 5
Externí odkaz:
https://doaj.org/article/63988f1708e54a1f847f9242e702ca19
Autor:
Baumbach Jan, Bunkowski Alexander, Lange Sita, Oberwahrenbrock Timm, Kleinbölting Nils, Rahmann Sven, Baumbach Jörg Ingo
Publikováno v:
Journal of Integrative Bioinformatics, Vol 4, Iss 3, Pp 186-197 (2007)
IMS2 is an Integrated Medical Software system for the analysis of Ion Mobility Spectrometry (IMS) data. It assists medical staff with the following IMS data processing steps: acquisition, visualization, classification, and annotation. IMS2 provides d
Externí odkaz:
https://doaj.org/article/76a8b25016514b228bda124d78f0d28f
Publikováno v:
Journal of Integrative Bioinformatics, Vol 3, Iss 2, Pp 1-13 (2006)
CoryneRegNet is an ontology-based data warehouse of corynebacterial transcription factors and regulatory networks. Initially, it was designed to provide methods for the analysis and visualization of the gene regulatory network of Corynebacterium glut
Externí odkaz:
https://doaj.org/article/e98dbf342ecb4da7b5704e2dec801c2c
Publikováno v:
BMC Bioinformatics, Vol 12, Iss 1, p 47 (2011)
Abstract Background Molecular database search tools need statistical models to assess the significance for the resulting hits. In the classical approach one asks the question how probable a certain score is observed by pure chance. Asymptotic theorie
Externí odkaz:
https://doaj.org/article/807ce050fb3240afbba65f304ae727b4
Autor:
Dandekar Thomas, Gunzer Florian, Ron Eliora, Fruth Angelika, Rabsch Wolfgang, Weigel Wilfried, Rahmann Sven, Friedrich Torben, Hacker Jörg, Müller Tobias, Dobrindt Ulrich
Publikováno v:
BMC Genomics, Vol 11, Iss 1, p 591 (2010)
Abstract Background The Enterobacteriaceae comprise a large number of clinically relevant species with several individual subspecies. Overlapping virulence-associated gene pools and the high overall genome plasticity often interferes with correct ent
Externí odkaz:
https://doaj.org/article/d76342dff2fe4b51bff383486aa72da8
Publikováno v:
BMC Bioinformatics, Vol 8, Iss 1, p 396 (2007)
Abstract Background Detecting groups of functionally related proteins from their amino acid sequence alone has been a long-standing challenge in computational genome research. Several clustering approaches, following different strategies, have been p
Externí odkaz:
https://doaj.org/article/a1efbf79a8a248458eedf7d194b2259f
Publikováno v:
BMC Genomics, Vol 7, Iss 1, p 24 (2006)
Abstract Background The application of DNA microarray technology in post-genomic analysis of bacterial genome sequences has allowed the generation of huge amounts of data related to regulatory networks. This data along with literature-derived knowled
Externí odkaz:
https://doaj.org/article/daa9f9607cef4acbbece4277ebea290c
Publikováno v:
BMC Evolutionary Biology, Vol 4, Iss 1, p 20 (2004)
Abstract Background In phylogenetic analysis we face the problem that several subclade topologies are known or easily inferred and well supported by bootstrap analysis, but basal branching patterns cannot be unambiguously estimated by the usual metho
Externí odkaz:
https://doaj.org/article/03071dc8f69d4f839908556d81ee6820
Publikováno v:
BMC Bioinformatics, Vol 5, Iss 1, p 7 (2004)
Abstract Background Profile Hidden Markov Models (pHMMs) are a widely used tool for protein family research. Up to now, however, there exists no method to visualize all of their central aspects graphically in an intuitively understandable way. Result
Externí odkaz:
https://doaj.org/article/6939e3e1a1a14393842224daaa0e84cb