Zobrazeno 1 - 6
of 6
pro vyhledávání: '"Rafael Riudavets-Puig"'
Autor:
Rafael Riudavets Puig, Paul Boddie, Aziz Khan, Jaime Abraham Castro-Mondragon, Anthony Mathelier
Publikováno v:
BMC Genomics, Vol 22, Iss 1, Pp 1-17 (2021)
Abstract Background Transcription factors (TFs) bind specifically to TF binding sites (TFBSs) at cis-regulatory regions to control transcription. It is critical to locate these TF-DNA interactions to understand transcriptional regulation. Efforts to
Externí odkaz:
https://doaj.org/article/c1dfb77937cb4c8db6f7f2fc1df4fd9f
Autor:
Aziz Khan, Damir Baranasic, Benoit Ballester, Ieva Rauluseviciute, Fayrouz Hammal, Klaas Vandepoele, Paul Boddie, Anthony Mathelier, Daniel Schmelter, Rafael Riudavets-Puig, Wyeth W. Wasserman, Jérémy Lucas, François Parcy, Oriol Fornes, Boris Lenhard, Laura Turchi, Romain Blanc-Mathieu, Jaime A. Castro-Mondragon, Albin Sandelin, Nicolás Manosalva Pérez, Roza Berhanu Lemma, Tiffany Y. Leung, Alejandro Aguirre
Publikováno v:
Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2021, ⟨10.1093/nar/gkab1113⟩
NUCLEIC ACIDS RESEARCH
Nucleic Acids Research, 2022, 50 (D1), pp.D165-D173. ⟨10.1093/nar/gkab1113⟩
Castro-Mondragon, J A, Riudavets-Puig, R, Rauluseviciute, I, Lemma, R B, Turchi, L, Blanc-Mathieu, R, Lucas, J, Boddie, P, Khan, A, Perez, N M, Fornes, O, Leung, T Y, Aguirre, A, Hammal, F, Schmelter, D, Baranasic, D, Ballester, B, Sandelin, A, Lenhard, B, Vandepoele, K, Wasserman, W W, Parcy, F & Mathelier, A 2022, ' JASPAR 2022 : the 9th release of the open-access database of transcription factor binding profiles ', Nucleic acids symposium series, vol. 50, no. D1, pp. D165-D173 . https://doi.org/10.1093/nar/gkab1113
Nucleic Acids Research, Oxford University Press, 2021, ⟨10.1093/nar/gkab1113⟩
NUCLEIC ACIDS RESEARCH
Nucleic Acids Research, 2022, 50 (D1), pp.D165-D173. ⟨10.1093/nar/gkab1113⟩
Castro-Mondragon, J A, Riudavets-Puig, R, Rauluseviciute, I, Lemma, R B, Turchi, L, Blanc-Mathieu, R, Lucas, J, Boddie, P, Khan, A, Perez, N M, Fornes, O, Leung, T Y, Aguirre, A, Hammal, F, Schmelter, D, Baranasic, D, Ballester, B, Sandelin, A, Lenhard, B, Vandepoele, K, Wasserman, W W, Parcy, F & Mathelier, A 2022, ' JASPAR 2022 : the 9th release of the open-access database of transcription factor binding profiles ', Nucleic acids symposium series, vol. 50, no. D1, pp. D165-D173 . https://doi.org/10.1093/nar/gkab1113
JASPAR (http://jaspar.genereg.net/) is an open-access database containing manually curated, non-redundant transcription factor (TF) binding profiles for TFs across six taxonomic groups. In this 9th release, we expanded the CORE collection with 341 ne
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5d158f1948375c5777d9f52d837aac17
https://hal.archives-ouvertes.fr/hal-03463821/file/Jaspar_2022.pdf
https://hal.archives-ouvertes.fr/hal-03463821/file/Jaspar_2022.pdf
Publikováno v:
Bioinformatics
Motivation Accurate motif enrichment analyses depend on the choice of background DNA sequences used, which should ideally match the sequence composition of the foreground sequences. It is important to avoid false positive enrichment due to sequence b
Publikováno v:
BMC Genomics, Vol 22, Iss 1, Pp 1-17 (2021)
BMC Genomics
BMC Genomics
Background Transcription factors (TFs) bind specifically to TF binding sites (TFBSs) at cis-regulatory regions to control transcription. It is critical to locate these TF-DNA interactions to understand transcriptional regulation. Efforts to predict b
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0f2e3a08aa15bc66ada9ec3e65c22a99
http://hdl.handle.net/10852/86500
http://hdl.handle.net/10852/86500
Publikováno v:
Current protocols in bioinformaticsLiterature Cited. 72(1)
The BioGateway App is a plugin for the Cytoscape network editor, allowing users to interactively build biological networks by querying the Biogateway Resource Description Framework (RDF) triple store. BioGateway contains information from several cura
Publikováno v:
Bioinformatics
Summary The BioGateway App is a Cytoscape (version 3) plugin designed to provide easy query access to the BioGateway Resource Description Framework triple store, which contains functional and interaction information for proteins from several curated