Zobrazeno 1 - 6
of 6
pro vyhledávání: '"Rachel L. Rusholme Pilcher"'
Autor:
Erik Garrison, Andrea Guarracino, Simon Heumos, Flavia Villani, Zhigui Bao, Lorenzo Tattini, Jörg Hagmann, Sebastian Vorbrugg, Santiago Marco-Sola, Christian Kubica, David G. Ashbrook, Kaisa Thorell, Rachel L. Rusholme-Pilcher, Gianni Liti, Emilio Rudbeck, Sven Nahnsen, Zuyu Yang, Mwaniki N. Moses, Franklin L. Nobrega, Yi Wu, Hao Chen, Joep de Ligt, Peter H. Sudmant, Nicole Soranzo, Vincenza Colonna, Robert W. Williams, Pjotr Prins
Publikováno v:
bioRxiv
Pangenome graphs can represent all variation between multiple genomes, but existing methods for constructing them are biased due to reference-guided approaches. In response, we have developed PanGenome Graph Builder (PGGB), a reference-free pipeline
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fb98b2f69c06b54f2279a8a83df36c34
https://europepmc.org/articles/PMC10104075/
https://europepmc.org/articles/PMC10104075/
Autor:
Gyorgy Szittya, Simon Moxon, Vitantonio Pantaleo, Gabor Toth, Rachel L Rusholme Pilcher, Vincent Moulton, Jozsef Burgyan, Tamas Dalmay
Publikováno v:
PLoS Pathogens, Vol 6, Iss 4, p e1000838 (2010)
A large amount of short interfering RNA (vsiRNA) is generated from plant viruses during infection, but the function, structure and biogenesis of these is not understood. We profiled vsiRNAs using two different high-throughput sequencing platforms and
Externí odkaz:
https://doaj.org/article/371ac8e2274a4ab588696864f788e360
Genetic control of immunity toTurnip mosaic virus(TuMV) pathotype 1 inBrassica rapa(Chinese cabbage)
Publikováno v:
Genome. 57:419-425
Turnip mosaic virus (TuMV) is the major virus infecting crops of the genus Brassica worldwide. A dominant resistance gene, TuRB01b, that confers immunity to the virus isolate UK 1 (a representative pathotype 1 isolate of TuMV) on Brassica rapa was id
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::47a8ccc8512addc98f86f6994478cde1
https://doi.org/10.1139/gen-2014-0070
https://doi.org/10.1139/gen-2014-0070
Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
Autor:
Runchun Jing, Simon Moxon, Frank Schwach, Vincent Moulton, Rachel L. Rusholme Pilcher, Tamas Dalmay, György Szittya
Publikováno v:
Genome Research. 18:1602-1609
In plants there are several classes of 21–24-nt short RNAs that regulate gene expression. The most conserved class is the microRNAs (miRNAs), although some miRNAs are found only in specific species. We used high-throughput pyrosequencing to identif
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::891c4017602cbf74ebc68a4459364842
https://doi.org/10.1101/gr.080127.108
https://doi.org/10.1101/gr.080127.108
Publikováno v:
Biochemical and biophysical research communications. 368(2)
Dicot Dicer-like (DCL) enzymes operate preferably on GC rich regions when producing small interfering (si)RNA and micro (mi)RNA. This GC bias, however, is not generic in monocot miRNA productions. From wild Dactylis glomerata naturally infected by Co
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6d49da391a181d90cc5c138375f78698
https://pubmed.ncbi.nlm.nih.gov/18243131
https://pubmed.ncbi.nlm.nih.gov/18243131
Autor:
Nima Pakseresht, Rachel L. Rusholme Pilcher, Vincent Moulton, Graham B. Seymour, Tamas Dalmay, Simon Moxon, Kenneth Manning
Publikováno v:
Planta. 226(3)
To date, the majority of plant small RNAs (sRNA) have been identified in rice, poplar and Arabidopsis. To identify novel tomato sRNAs potentially involved in tomato specific processes such as fruit development and/or ripening, we cloned 4,018 sRNAs f
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a459e2a7e5fd4229be5c639f47c8d458
https://pubmed.ncbi.nlm.nih.gov/17415587
https://pubmed.ncbi.nlm.nih.gov/17415587