Zobrazeno 1 - 10
of 60
pro vyhledávání: '"Rachel J Dutton"'
Publikováno v:
eLife, Vol 7 (2018)
Microbial community structure and function rely on complex interactions whose underlying molecular mechanisms are poorly understood. To investigate these interactions in a simple microbiome, we introduced E. coli into an experimental community based
Externí odkaz:
https://doaj.org/article/122e2c8d63854fba8ed03c29a0ac5e15
Publikováno v:
eLife, Vol 6 (2017)
Acquisition of genes through horizontal gene transfer (HGT) allows microbes to rapidly gain new capabilities and adapt to new or changing environments. Identifying widespread HGT regions within multispecies microbiomes can pinpoint the molecular mech
Externí odkaz:
https://doaj.org/article/0efcf0b9e4264917969e83ff21042ea8
Publikováno v:
Scientific Reports, Vol 12, Iss 1, Pp 1-16 (2022)
Abstract Non-pairwise interactions, or higher-order interactions (HOIs), in microbial communities have been described as significant drivers of emergent features in microbiomes. Yet, the re-organization of microbial interactions between pairwise cult
Externí odkaz:
https://doaj.org/article/9d15109f85f74981810da287cc2bcb32
Autor:
Christina C. Saak, Emily C. Pierce, Cong B. Dinh, Daniel Portik, Richard Hall, Meredith Ashby, Rachel J. Dutton
Publikováno v:
mSystems, Vol 8, Iss 1 (2023)
ABSTRACT Microbiomes are intricately intertwined with human health, geochemical cycles, and food production. While many microbiomes of interest are highly complex and experimentally intractable, cheese rind microbiomes have proven to be powerful mode
Externí odkaz:
https://doaj.org/article/b73e6d105ed543bebbf2e4a7b952bf13
Autor:
Julia M. Gauglitz, Kiana A. West, Wout Bittremieux, Candace L. Williams, Kelly C. Weldon, Morgan Panitchpakdi, Francesca Di Ottavio, Christine M. Aceves, Elizabeth Brown, Nicole C. Sikora, Alan K. Jarmusch, Cameron Martino, Anupriya Tripathi, Michael J. Meehan, Kathleen Dorrestein, Justin P. Shaffer, Roxana Coras, Fernando Vargas, Lindsay DeRight Goldasich, Tara Schwartz, MacKenzie Bryant, Gregory Humphrey, Abigail J. Johnson, Katharina Spengler, Pedro Belda-Ferre, Edgar Diaz, Daniel McDonald, Qiyun Zhu, Emmanuel O. Elijah, Mingxun Wang, Clarisse Marotz, Kate E. Sprecher, Daniela Vargas-Robles, Dana Withrow, Gail Ackermann, Lourdes Herrera, Barry J. Bradford, Lucas Maciel Mauriz Marques, Juliano Geraldo Amaral, Rodrigo Moreira Silva, Flavio Protasio Veras, Thiago Mattar Cunha, Rene Donizeti Ribeiro Oliveira, Paulo Louzada-Junior, Robert H. Mills, Paulina K. Piotrowski, Stephanie L. Servetas, Sandra M. Da Silva, Christina M. Jones, Nancy J. Lin, Katrice A. Lippa, Scott A. Jackson, Rima Kaddurah Daouk, Douglas Galasko, Parambir S. Dulai, Tatyana I. Kalashnikova, Curt Wittenberg, Robert Terkeltaub, Megan M. Doty, Jae H. Kim, Kyung E. Rhee, Julia Beauchamp-Walters, Kenneth P. Wright, Maria Gloria Dominguez-Bello, Mark Manary, Michelli F. Oliveira, Brigid S. Boland, Norberto Peporine Lopes, Monica Guma, Austin D. Swafford, Rachel J. Dutton, Rob Knight, Pieter C. Dorrestein
Publikováno v:
Nature biotechnology, vol 40, iss 12
Nat Biotechnol
Nat Biotechnol
Human untargeted metabolomics studies annotate only ~10% of molecular features. We introduce reference-data-driven analysis to match metabolomics tandem mass spectrometry (MS/MS) data against metadata-annotated source data as a pseudo-MS/MS reference
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fadcc5a8ebaed4c919d942163887bc61
https://doi.org/10.1038/s41587-022-01368-1
https://doi.org/10.1038/s41587-022-01368-1
Autor:
Gordon T. Luu, Jessica C. Little, Emily C. Pierce, Manon Morin, Celine A. Ertekin, Benjamin E. Wolfe, Oliver Baars, Rachel J. Dutton, Laura M. Sanchez
Publikováno v:
bioRxiv
Bacterial-fungal interactions (BFIs) can shape the structure of microbial communities, but the small molecules mediating these BFIs are often understudied. We explored various optimization steps for our microbial culture and chemical extraction proto
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3a2e5c5554e2c0966a38e011def0800c
https://europepmc.org/articles/PMC10054941/
https://europepmc.org/articles/PMC10054941/
Autor:
Emily C Pierce, Rachel J. Dutton
Publikováno v:
Current Opinion in Microbiology. 65:56-63
Microbial interactions are key aspects of the biology of microbiomes. Recently, there has been a shift in the field towards studying interactions in more representative contexts, whether using multispecies model microbial communities or by looking at
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::33ba6347bd3435471aa999e85d6b46c0
https://doi.org/10.1016/j.mib.2021.10.008
https://doi.org/10.1016/j.mib.2021.10.008
Autor:
Erik K. Kastman, Noelani Kamelamela, Josh W. Norville, Casey M. Cosetta, Rachel J. Dutton, Benjamin E. Wolfe
Publikováno v:
mBio, Vol 8, Iss 2 (2017)
Externí odkaz:
https://doaj.org/article/463b7af8fb054a13aee204716b4fd484
Autor:
Erik K. Kastman, Noelani Kamelamela, Josh W. Norville, Casey M. Cosetta, Rachel J. Dutton, Benjamin E. Wolfe
Publikováno v:
mBio, Vol 7, Iss 5 (2016)
ABSTRACT Many metagenomic sequencing studies have observed the presence of closely related bacterial species or genotypes in the same microbiome. Previous attempts to explain these patterns of microdiversity have focused on the abiotic environment, b
Externí odkaz:
https://doaj.org/article/3b293b242c9e4dd583c4f087720f8fe2
Autor:
Nicholas A. Bokulich, Jai Ram Rideout, William G. Mercurio, Arron Shiffer, Benjamin Wolfe, Corinne F. Maurice, Rachel J. Dutton, Peter J. Turnbaugh, Rob Knight, J. Gregory Caporaso
Publikováno v:
mSystems, Vol 1, Iss 5 (2016)
ABSTRACT Mock communities are an important tool for validating, optimizing, and comparing bioinformatics methods for microbial community analysis. We present mockrobiota, a public resource for sharing, validating, and documenting mock community data
Externí odkaz:
https://doaj.org/article/aa182d80d78440c2a9049d7390b83256