Identification of copy number variation in French dairy and beef breeds using next-generation sequencing

Autor: Rabia Letaief, Emmanuelle Rebours, Cécile Grohs, Cédric Meersseman, Sébastien Fritz, Lidwine Trouilh, Diane Esquerré, Johanna Barbieri, Christophe Klopp, Romain Philippe, Véronique Blanquet, Didier Boichard, Dominique Rocha, Mekki Boussaha

Publikováno v: Genetics Selection Evolution, Vol 49, Iss 1, Pp 1-15 (2017)

Abstract Background Copy number variations (CNV) are known to play a major role in genetic variability and disease pathogenesis in several species including cattle. In this study, we report the identification and characterization of CNV in eight Fren

Externí odkaz: https://doaj.org/article/9f283a0c299c433ebbe5fbe4244d3f77

Genome-wide study of structural variants in French dairy and beef breeds

Autor: Didier Boichard, mekki boussaha, Cécile Grohs, Rabia Letaief, Sebastien Fritz, Johanna Barbieri, Christophe Klopp, Romain Philippe, Dominique Rocha, Aurelien Capitan

Publikováno v: 69th Annual Meeting of the European Federation of Animal Science. 2018; 69. Annual Meeting of the European Federation of Animal Science (EAAP), Dubrovnik, HRV, 2018-08-27-2018-08-31, 352
HAL
Annual Meeting of the European Association for Animal Production
69. Annual Meeting of the European Federation of Animal Science (EAAP)
69. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2018, Dubrovnik, Croatia

International audience

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::4229c537954b247c12bec626ac255170
http://prodinra.inra.fr/record/447178

Identification of copy number variation in French dairy and beef breeds using next-generation sequencing

Autor: Didier Boichard, Lidwine Trouilh, Diane Esquerre, Cécile Grohs, Mekki Boussaha, Johanna Barbieri, Sébastien Fritz, Véronique Blanquet, Rabia Letaief, Dominique Rocha, Romain Philippe, Emmanuelle Rebours, Cédric Meersseman, Christophe Klopp

Publikováno v: Genetics Selection Evolution 1 (49), 77. (2017)
Genetics Selection Evolution
Genetics Selection Evolution, BioMed Central, 2017, 49 (1), pp.77. ⟨10.1186/s12711-017-0352-z⟩
Genetics, Selection, Evolution : GSE
Genetics Selection Evolution, 2017, 49 (1), pp.77. ⟨10.1186/s12711-017-0352-z⟩
Genetics Selection Evolution, Vol 49, Iss 1, Pp 1-15 (2017)

Background : We report the identification and localization of 4178 putative deletion-only, duplication-only and CNV regions, which cover 6% of the bovine autosomal genome; they were validated by two in silico approaches and/or experimentally validate

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0e535cc0ed511a38cc90cc4dc04fcb81
http://prodinra.inra.fr/record/415377

Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences

Autor: Christophe Klopp, Pauline Michot, Chris Hozé, Amandine Duchesne, Cécile Grohs, Dominique Rocha, Sandrine Floriot, Sébastien Fritz, Mekki Boussaha, Rabia Letaief, Didier Boichard, Aurélien Capitan, Florence Phocas, Romain Philippe, Diane Esquerre, Véronique Blanquet

Publikováno v: Genetics Selection Evolution
Genetics Selection Evolution, BioMed Central, 2016, 48 (1), pp.87. ⟨10.1186/s12711-016-0268-z⟩
Genetics Selection Evolution 1 (48), 1-10. (2016)
Genetics, Selection, Evolution : GSE

Background In recent years, several bovine genome sequencing projects were carried out with the aim of developing genomic tools to improve dairy and beef production efficiency and sustainability. Results In this study, we describe the first French ca

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0e27a48dca58e88ac0437db3dd482fda
https://hal.archives-ouvertes.fr/hal-01479216

Genome-wide study of structural variants in bovine Holstein, Montbéliarde and Normande dairy breeds

Autor: Alain Pinton, Frédéric Escudié, Maria Bernard, Anis Djari, Alain Roulet, Mekki Boussaha, Franck Samson, Diane Esquerre, Cécile Grohs, Johanna Barbieri, Sébastien Fritz, Rabia Letaief, Christophe Klopp, Gerald Salin, Didier Boichard, Dominique Rocha

Publikováno v: PLoS ONE
PLoS ONE, Public Library of Science, 2015, 10 (8), pp.1-21. ⟨10.1371/journal.pone.0135931⟩
Plos One 8 (10), 1-21. (2015)
PLoS ONE, Vol 10, Iss 8, p e0135931 (2015)

High-throughput sequencing technologies have offered in recent years new opportunities to study genome variations. These studies have mostly focused on single nucleotide polymorphisms, small insertions or deletions and on copy number variants. Other

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7285c3c04012016b96ec50ab232e0c7b
https://hal.archives-ouvertes.fr/hal-01194172/file/2015_Boussaha_PlosOne_1.pdf