Library Preparation for small RNA sequencing using 4N adapters: In house 4N Protocol A

Autor: Roger P. Alexander, MD Giraldez, RM Spengler, A Etheridge, PM Godoy, AJ Barczak, S Srinivasan, PL De Hoff, K Tanriverdi, A Courtright, S Lu, J Khoory, R Rubio, D Baxter, TAP Driedonks, HPJ Buermans, ENM Nolte-t Hoen, H Jiang, K Wang, I Ghiran, Y Wang, K Van Keuren-Jensen, JE Freedman, PG Woodruff, LC Laurent, DJ Erle, DJ Galas, M Tewari

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::61ebc7be83727f41e49cacb8f2e56252
https://escholarship.org/uc/item/2qw4d7mn

Men who inject opioids exhibit altered tRNA-Gly-GCC isoforms in semen.

Autor: Gornalusse G; Department of Obstetrics and Gynecology, University of Washington, Seattle, WA, USA., Spengler RM; Division of Hematology and Oncology, Department of Internal Medicine, University of Michigan, Ann Arbor, MI, USA., Sandford E; Division of Hematology and Oncology, Department of Internal Medicine, University of Michigan, Ann Arbor, MI, USA., Kim Y; Department of Obstetrics and Gynecology, University of Washington, Seattle, WA, USA., Levy C; Department of Obstetrics and Gynecology, University of Washington, Seattle, WA, USA., Tewari M; Division of Hematology and Oncology, Department of Internal Medicine, University of Michigan, Ann Arbor, MI, USA.; Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA.; Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.; VA Ann Arbor Healthcare System, Ann Arbor, MI, USA., Hladik F; Department of Obstetrics and Gynecology, University of Washington, Seattle, WA, USA.; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.; Division of Allergy and Infectious Diseases, Department of Medicine, University of Washington, Seattle, WA, USA., Vojtech L; Department of Obstetrics and Gynecology, University of Washington, Seattle, WA, USA.

Publikováno v: Molecular human reproduction [Mol Hum Reprod] 2023 Feb 28; Vol. 29 (3).

Human papilloma virus circulating tumor DNA assay predicts treatment response in recurrent/metastatic head and neck squamous cell carcinoma.

Autor: Haring CT; University of Michigan, Department of Otolaryngology-Head and Neck Surgery, Ann Arbor, MI 48109, USA.; Co-First Authors., Bhambhani C; University of Michigan, Department of Internal Medicine, Division of Hematology and Oncology, Ann Arbor, MI 48109, USA.; Co-First Authors., Brummel C; University of Michigan, Department of Otolaryngology-Head and Neck Surgery, Ann Arbor, MI 48109, USA., Jewell B; University of Michigan, Department of Otolaryngology-Head and Neck Surgery, Ann Arbor, MI 48109, USA., Bellile E; University of Michigan, Department of Biostatistics, Ann Arbor, MI 48109, USA., Heft Neal ME; University of Michigan, Department of Otolaryngology-Head and Neck Surgery, Ann Arbor, MI 48109, USA., Sandford E; University of Michigan, Department of Internal Medicine, Division of Hematology and Oncology, Ann Arbor, MI 48109, USA., Spengler RM; University of Michigan, Department of Internal Medicine, Division of Hematology and Oncology, Ann Arbor, MI 48109, USA., Bhangale A; University of Michigan, Department of Otolaryngology-Head and Neck Surgery, Ann Arbor, MI 48109, USA., Spector ME; University of Michigan, Department of Otolaryngology-Head and Neck Surgery, Ann Arbor, MI 48109, USA.; University of Michigan, Rogel Cancer Center, Ann Arbor, MI 48109, USA., McHugh J; University of Michigan, Rogel Cancer Center, Ann Arbor, MI 48109, USA.; University of Michigan, Department of Pathology, Ann Arbor, MI 48109, USA., Prince ME; University of Michigan, Department of Otolaryngology-Head and Neck Surgery, Ann Arbor, MI 48109, USA., Mierzwa M; University of Michigan, Rogel Cancer Center, Ann Arbor, MI 48109, USA.; University of Michigan, Department of Radiation Oncology, Ann Arbor, MI 48109, USA., Worden FP; University of Michigan, Department of Internal Medicine, Division of Hematology and Oncology, Ann Arbor, MI 48109, USA.; University of Michigan, Rogel Cancer Center, Ann Arbor, MI 48109, USA., Tewari M; University of Michigan, Department of Internal Medicine, Division of Hematology and Oncology, Ann Arbor, MI 48109, USA.; University of Michigan, Rogel Cancer Center, Ann Arbor, MI 48109, USA.; University of Michigan, Department of Biomedical Engineering, Ann Arbor, MI 48109, USA.; University of Michigan, Center for Computational Medicine and Bioinformatics, Ann Arbor, MI 48109, USA.; Co-Senior Authors., Swiecicki PL; University of Michigan, Department of Internal Medicine, Division of Hematology and Oncology, Ann Arbor, MI 48109, USA.; University of Michigan, Rogel Cancer Center, Ann Arbor, MI 48109, USA.; Co-Senior Authors., Brenner JC; University of Michigan, Department of Otolaryngology-Head and Neck Surgery, Ann Arbor, MI 48109, USA.; University of Michigan, Rogel Cancer Center, Ann Arbor, MI 48109, USA.; University of Michigan, Department of Pharmacology, Ann Arbor, MI 48109, USA.; Co-Senior Authors.

Publikováno v: Oncotarget [Oncotarget] 2021 Jun 22; Vol. 12 (13), pp. 1214-1229. Date of Electronic Publication: 2021 Jun 22 (Print Publication: 2021).

The long non-coding RNA NEAT1 is elevated in polyglutamine repeat expansion diseases and protects from disease gene-dependent toxicities.

Autor: Cheng C; Raymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, USA., Spengler RM; Department of Internal Medicine, University of Michigan, Ann Arbor, MI, USA., Keiser MS; Raymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, USA., Monteys AM; Raymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, USA., Rieders JM; Raymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, USA., Ramachandran S; Raymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, USA., Davidson BL; Raymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.; Department of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia and University of Pennsylvania, Philadelphia, PA, USA.

Publikováno v: Human molecular genetics [Hum Mol Genet] 2018 Dec 15; Vol. 27 (24), pp. 4303-4314.

Comprehensive multi-center assessment of small RNA-seq methods for quantitative miRNA profiling.

Autor: Giraldez MD; Department of Internal Medicine, Hematology/Oncology Division, University of Michigan, Ann Arbor, Michigan, USA., Spengler RM; Department of Internal Medicine, Hematology/Oncology Division, University of Michigan, Ann Arbor, Michigan, USA., Etheridge A; Pacific Northwest Research Institute, Seattle, Washington, USA., Godoy PM; Lung Biology Center, Department of Medicine, University of California San Francisco, San Francisco, California, USA., Barczak AJ; Lung Biology Center, Department of Medicine, University of California San Francisco, San Francisco, California, USA., Srinivasan S; Department of Obstetrics, Gynecology, and Reproductive Sciences and Sanford Consortium for Regenerative Medicine, University of California, San Diego, La Jolla, California, USA., De Hoff PL; Department of Obstetrics, Gynecology, and Reproductive Sciences and Sanford Consortium for Regenerative Medicine, University of California, San Diego, La Jolla, California, USA., Tanriverdi K; Department of Medicine, Division of Cardiovascular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts, USA., Courtright A; Neurogenomics, The Translational Genomics Research Institute (TGen), Phoenix, Arizona, USA., Lu S; Department of Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, USA., Khoory J; Department of Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, USA., Rubio R; Center for Cancer Computational Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA., Baxter D; Institute for Systems Biology, Seattle, Washington, USA., Driedonks TAP; Department of Biochemistry & Cell Biology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, the Netherlands., Buermans HPJ; Leiden Genome Technology Center, Department of Human Genetics, Leiden University Medical Center, Leiden, the Netherlands., Nolte-'t Hoen ENM; Department of Biochemistry & Cell Biology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, the Netherlands., Jiang H; Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, USA.; Department of Biostatistics, University of Michigan, Ann Arbor, Michigan, USA., Wang K; Institute for Systems Biology, Seattle, Washington, USA., Ghiran I; Department of Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, USA., Wang YE; Center for Cancer Computational Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA., Van Keuren-Jensen K; Neurogenomics, The Translational Genomics Research Institute (TGen), Phoenix, Arizona, USA., Freedman JE; Department of Medicine, Division of Cardiovascular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts, USA., Woodruff PG; Cardiovascular Research Institute and the Department of Medicine, Division of Pulmonary, Critical Care, Sleep, and Allergy, University of California San Francisco, San Francisco, California, USA., Laurent LC; Department of Obstetrics, Gynecology, and Reproductive Sciences and Sanford Consortium for Regenerative Medicine, University of California, San Diego, La Jolla, California, USA., Erle DJ; Lung Biology Center, Department of Medicine, University of California San Francisco, San Francisco, California, USA., Galas DJ; Pacific Northwest Research Institute, Seattle, Washington, USA., Tewari M; Department of Internal Medicine, Hematology/Oncology Division, University of Michigan, Ann Arbor, Michigan, USA.; Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, USA.; Department of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan, USA.; Biointerfaces Institute, University of Michigan, Ann Arbor, Michigan, USA.

Publikováno v: Nature biotechnology [Nat Biotechnol] 2018 Sep; Vol. 36 (8), pp. 746-757. Date of Electronic Publication: 2018 Jul 16.