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Akademický článek

Genomewide Transcriptional Responses of Iron-Starved Chlamydia trachomatis Reveal Prioritization of Metabolic Precursor Synthesis over Protein Translation

Autor: Amanda J. Brinkworth, Mark R. Wildung, Rey A. Carabeo

Publikováno v: mSystems, Vol 3, Iss 1 (2018)

ABSTRACT Iron is essential for growth and development of Chlamydia. Its long-term starvation in cultured mammalian cells leads to production of aberrant noninfectious chlamydial forms, also known as persistence. Immediate transcriptional responses to

Externí odkaz: https://doaj.org/article/31d0bf6cdf4d427cadf637f4db5e324f

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Directed Sequencing of Plant Specific DNA Identifies the Dietary History of Four Species of Auchenorrhyncha (Hemiptera)

Autor: W Rodney Cooper, Adrian T Marshall, Jillian Foutz, Mark R Wildung, Tobin D Northfield, David W Crowder, Heather Leach, Tracy C Leskey, Susan E Halbert, James B Snyder

Publikováno v: Annals of the Entomological Society of America. 115:275-284

Auchenorrhyncha (Hemiptera) includes several families of sap-feeding insects that tend to feed on a wide-range of host plants. Some species within Auchenorrhyncha are major agricultural pests that transmit plant pathogens or cause direct feeding dama

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::41029927fa0d785018425f9a463f9277
https://doi.org/10.1093/aesa/saab053

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Bacterial Endosymbionts of Bactericera maculipennis and Three Mitochondrial Haplotypes of B. cockerelli (Hemiptera: Psylloidea: Triozidae)

Autor: W Rodney Cooper, David R Horton, Kylie Swisher-Grimm, Karol Krey, Mark R Wildung

Publikováno v: Environmental Entomology. 51:94-107

Insects harbor bacterial endosymbionts that provide their hosts with nutritional benefit or with protection against natural enemies, plant defenses, insecticides, or abiotic stresses. We used directed sequencing of 16S rDNA to identify and compare en

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a48916ed0b17ae0462ddd6344568d31d
https://doi.org/10.1093/ee/nvab133

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Association of Two Bactericera Species (Hemiptera: Triozidae) With Native Lycium spp. (Solanales: Solanaceae) in the Potato Growing Regions of the Rio Grande Valley of Texas

Autor: W Rodney Cooper, Gabriela Esparza-Diaz, Mark R Wildung, David R Horton, Ismael E Badillo-Vargas, Susan E Halbert

Publikováno v: Environmental entomology.

Bactericera cockerelli (Šulc) (Hemiptera: Triozidae) is a vector of ‘Candidatus Liberibacter solanacearum’ (Lso), the pathogen that causes potato zebra chip. Zebra chip incidence varies regionally, perhaps because of geographic differences in sp

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::802edd113d2ae4a3d22e74030bd28c06
https://pubmed.ncbi.nlm.nih.gov/36585828

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Comparative Omics Analysis of Historic and Recent Isolates of Bordetella pertussis and Effects of Genome Rearrangements on Evolution

Autor: Fabian Amman, Jana Zavadilová, Kateřina Fabiánová, Branislav Večerek, Mark R. Wildung, Denisa Petráčková, Dilip Kumar, Jakub Držmíšek, Jan Čapek, Daniel Štipl, Derek J. Pouchnik, Ana Dienstbier

Publikováno v: Emerging Infectious Diseases, Vol 27, Iss 1, Pp 57-68 (2021)
Emerging Infectious Diseases

Despite high vaccination coverage, pertussis is increasing in many industrialized countries, including the Czech Republic. To better understand Bordetella pertussis resurgence, we analyzed historic strains and recent clinical isolates by using a comp

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::651f4c94ca44aba5411b827712c68d68
https://wwwnc.cdc.gov/eid/article/27/1/19-1541_article

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Host and Non-host ‘Whistle Stops’ for Psyllids: Molecular Gut Content Analysis by High-Throughput Sequencing Reveals Landscape-Level Movements of Psylloidea (Hemiptera)

Autor: David G. Hall, Andrew S. Jensen, Louis B. Nottingham, Elizabeth H. Beers, Lukasz L. Stelinski, Carrie H. Wohleb, Dalila Rendon, David R. Horton, Mark R. Wildung, W. Rodney Cooper, Jenita Thinakaran

Publikováno v: Environmental Entomology. 48:554-566

Psyllids (Hemiptera: Psylloidea) are phloem-feeding insects that tend to be highly specific in their host plants. Some species are well-known agricultural pests, often as vectors of plant pathogens. Many pest psyllids colonize agricultural fields fro

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0bd2f9b52002a75d9d04aa320438919c
https://doi.org/10.1093/ee/nvz038

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Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation

Autor: Carol Ritland, Mark R. Wildung, Joerg Bohlmann, Robin J.N. Coope, Jean Bousquet, Benjamin P. Vandervalk, Justin Chu, Shaun D. Jackman, Anthony Raymond, Steven J.M. Jones, Stephen Pleasance, Inanc Birol, Hamid Mohamadi, Ewan A. Gibb, René L. Warren

Publikováno v: Genome Biology and Evolution

The genome sequences of the plastid and mitochondrion of white spruce (Picea glauca) were assembled from whole-genome shotgun sequencing data using ABySS. The sequencing data contained reads from both the nuclear and organellar genomes, and reads of

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::25791fc796c056907480975382226763
http://europepmc.org/articles/PMC4758241

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Genomewide Transcriptional Responses of Iron-Starved

Autor: Amanda J, Brinkworth, Mark R, Wildung, Rey A, Carabeo

Publikováno v: mSystems

By utilizing an experimental approach that monitors the immediate global response of Chlamydia trachomatis to iron starvation, clues to long-standing issues in Chlamydia biology are revealed, including how Chlamydia adapts to this stress. We determin

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::936e450cb022ad6dabbfda537c5050ea
https://pubmed.ncbi.nlm.nih.gov/29468197

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Complete genome of the switchgrass endophyte Enterobacter clocace P101

Autor: Eric W. Triplett, Brenda K. Schroeder, Jodi L. Humann, Ursula N. Zipperer, Austin A. Bates, Derek J. Pouchnik, Jennifer C. Drew, Mark R. Wildung, Dorrie Main

Publikováno v: Standards in Genomic Sciences

The Enterobacter cloacae complex is genetically very diverse. The increasing number of complete genomic sequences of E. cloacae is helping to determine the exact relationship among members of the complex. E. cloacae P101 is an endophyte of switchgras

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::16f3d6ccad73d3b399c3fece57882456
https://doi.org/10.4056/sigs.4808608

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Accurate profiling of gene expression and alternative polyadenylation with whole transcriptome termini site sequencing (WTTS-Seq)

Autor: Xiang Zhou, Zhihua Jiang, Yin Xia, Hui Zhao, Weiwei Du, Jennifer J. Michal, Rui Li, Derek J. Pouchnik, Mark R. Wildung, Xiao-Lin Wu, Richard M. Harland, Zhongzhen Liu

Publikováno v: Zhou, X; Li, R; Michal, JJ; Wu, XL; Liu, Z; Zhao, H; et al.(2016). Accurate profiling of gene expression and alternative polyadenylation with whole transcriptome termini site sequencing (WTTS-Seq). Genetics, 203(2), 683-697. doi: 10.1534/genetics.116.188508. UC Berkeley: Retrieved from: http://www.escholarship.org/uc/item/98s4c3mw
Genetics
Genetics, vol 203, iss 2

Construction of next-generation sequencing (NGS) libraries involves RNA manipulation, which often creates noisy, biased, and artifactual data that contribute to errors in transcriptome analysis. In this study, a total of 19 whole transcriptome termin

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::183cf65abfb608e0c69014f5d28db74c
http://www.escholarship.org/uc/item/98s4c3mw

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