Zobrazeno 1 - 10
of 856
pro vyhledávání: '"R. A. LEO"'
Autor:
Michael X. Wang, Esther G. Lou, Nicolae Sapoval, Eddie Kim, Prashant Kalvapalle, Bryce Kille, R. A. Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B. Stadler, Todd J. Treangen
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-12 (2024)
Abstract Tiled amplicon sequencing has served as an essential tool for tracking the spread and evolution of pathogens. Over 15 million complete SARS-CoV-2 genomes are now publicly available, most sequenced and assembled via tiled amplicon sequencing.
Externí odkaz:
https://doaj.org/article/c670d790ce214a17bb6d50275f486f82
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-14 (2022)
Contaminant sequences in metagenomic samples can potentially impact the interpretation of findings reported in microbiome studies, especially in low biomass environments. Here the authors describe Squeegee, a computational approach designed to detect
Externí odkaz:
https://doaj.org/article/b0c2ddaf39714c43a59d88919f452807
Autor:
R. A. Leo
Publikováno v:
Russian Journal of Economics and Law, Vol 16, Iss 3, Pp 625-665 (2022)
Objective: to summarize and study the law-application errors during preliminary interrogation, court investigation, and conviction in the American criminal justice system.Methods: dialectical approach to cognition of social phenomena, allowing to ana
Externí odkaz:
https://doaj.org/article/0d0a35dd7b0f4ca9874144913c11feaa
SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning
Autor:
Advait Balaji, Bryce Kille, Anthony D. Kappell, Gene D. Godbold, Madeline Diep, R. A. Leo Elworth, Zhiqin Qian, Dreycey Albin, Daniel J. Nasko, Nidhi Shah, Mihai Pop, Santiago Segarra, Krista L. Ternus, Todd J. Treangen
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-29 (2022)
Abstract The COVID-19 pandemic has emphasized the importance of accurate detection of known and emerging pathogens. However, robust characterization of pathogenic sequences remains an open challenge. To address this need we developed SeqScreen, which
Externí odkaz:
https://doaj.org/article/9c83eebfad2b4b72a204629a4c57f43d
Autor:
Nicolae Sapoval, Amirali Aghazadeh, Michael G. Nute, Dinler A. Antunes, Advait Balaji, Richard Baraniuk, C. J. Barberan, Ruth Dannenfelser, Chen Dun, Mohammadamin Edrisi, R. A. Leo Elworth, Bryce Kille, Anastasios Kyrillidis, Luay Nakhleh, Cameron R. Wolfe, Zhi Yan, Vicky Yao, Todd J. Treangen
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-12 (2022)
Deep learning has enabled advances in understanding biology. In this review, the authors outline advances, and limitations of deep learning in five broad areas and the future challenges for the biosciences.
Externí odkaz:
https://doaj.org/article/14e0a06b00c7444c9c738a631681c526
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-12 (2021)
Advances in synthetic biology and genome engineering raise awareness of potential misuse. Here, the authors present PlasmidHawk, a sequence alignment based method for lab-of-origin prediction.
Externí odkaz:
https://doaj.org/article/76cf24da67b54c42b5e8ccaa72db4ea0
Autor:
Gupta, Gaurav, Yan, Minghao, Coleman, Benjamin, Kille, Bryce, Elworth, R. A. Leo, Medini, Tharun, Treangen, Todd, Shrivastava, Anshumali
DNA sequencing, especially of microbial genomes and metagenomes, has been at the core of recent research advances in large-scale comparative genomics. The data deluge has resulted in exponential growth in genomic datasets over the past years and has
Externí odkaz:
http://arxiv.org/abs/1910.04358
Autor:
Gupta, Gaurav, Yan, Minghao, Coleman, Benjamin, Elworth, R. A. Leo, Medini, Tharun, Treangen, Todd, Shrivastava, Anshumali
Multiple Set Membership Testing (MSMT) is a well-known problem in a variety of search and query applications. Given a dataset of K different sets and a query q, it aims to find all of the sets containing the query. Trivially, an MSMT instance can be
Externí odkaz:
http://arxiv.org/abs/1910.02611
Autor:
Wang, Michael X., Lou, Esther G., Sapoval, Nicolae, Kim, Eddie, Kalvapalle, Prashant, Kille, Bryce, Elworth, R. A. Leo, Liu, Yunxi, Fu, Yilei, Stadler, Lauren B., Treangen, Todd J.
Publikováno v:
Nature Communications; 7/26/2024, Vol. 15 Issue 1, p1-12, 12p
Autor:
M. Mihovilovič, G. Jin, E. Long, Y.-W. Zhang, K. Allada, B. Anderson, J.R.M. Annand, T. Averett, W. Bertozzi, W. Boeglin, P. Bradshaw, A. Camsonne, M. Canan, G.D. Cates, C. Chen, J.P. Chen, E. Chudakov, R. De Leo, X. Deng, A. Deltuva, A. Deur, C. Dutta, L. El Fassi, D. Flay, S. Frullani, F. Garibaldi, H. Gao, S. Gilad, R. Gilman, O. Glamazdin, J. Golak, S. Golge, J. Gomez, O. Hansen, D.W. Higinbotham, T. Holmstrom, J. Huang, H. Ibrahim, C.W. de Jager, E. Jensen, X. Jiang, M. Jones, H. Kamada, H. Kang, J. Katich, H.P. Khanal, A. Kievsky, P. King, W. Korsch, J. LeRose, R. Lindgren, H.-J. Lu, W. Luo, L.E. Marcucci, P. Markowitz, M. Meziane, R. Michaels, B. Moffit, P. Monaghan, N. Muangma, S. Nanda, B.E. Norum, K. Pan, D.S. Parno, E. Piasetzky, M. Posik, V. Punjabi, A.J.R. Puckett, X. Qian, Y. Qiang, X. Qui, S. Riordan, A. Saha, P.U. Sauer, B. Sawatzky, R. Schiavilla, B. Schoenrock, M. Shabestari, A. Shahinyan, S. Širca, R. Skibiński, J. St. John, R. Subedi, V. Sulkosky, W. Tireman, W.A. Tobias, K. Topolnicki, G.M. Urciuoli, M. Viviani, D. Wang, K. Wang, Y. Wang, J. Watson, B. Wojtsekhowski, H. Witała, Z. Ye, X. Zhan, Y. Zhang, X. Zheng, B. Zhao, L. Zhu
Publikováno v:
Physics Letters B, Vol 788, Iss , Pp 117-121 (2019)
We report on a precise measurement of double-polarization asymmetries in electron-induced breakup of He3 proceeding to pd and ppn final states, performed in quasi-elastic kinematics at Q2=0.25(GeV/c)2 for missing momenta up to 250MeV/c. These observa
Externí odkaz:
https://doaj.org/article/1fb07482241e4a32854ca95d66eef5fc