Zobrazeno 1 - 10
of 261
pro vyhledávání: '"R. A. Cutler"'
Autor:
Kari A. Brossard Stoos, Jennifer Ren, Robin R. Shields-Cutler, Kelly L. Sams, Shannon Caldwell, Marvin B. Ho, Gregg Rivara, Cheryl A. Whistler, Stephen H. Jones, Martin Wiedmann, Jamie DeMent, Rodman G. Getchell, Hélène Marquis
Publikováno v:
Frontiers in Microbiology, Vol 13 (2022)
IntroductionGastrointestinal illnesses associated with the consumption of shellfish contaminated with Vibrio parahaemolyticus have a negative impact on the shellfish industry due to recalls and loss of consumer confidence in products. This bacterial
Externí odkaz:
https://doaj.org/article/6f408400d36146c7a7fd97385a1cb164
Autor:
Dimitrios N. Sidiropoulos, Gabriel A. Al-Ghalith, Robin R. Shields-Cutler, Tonya L. Ward, Abigail J. Johnson, Pajau Vangay, Dan Knights, Purna C. Kashyap, Yibo Xian, Amanda E. Ramer-Tait, Jonathan B. Clayton
Publikováno v:
Animal Microbiome, Vol 2, Iss 1, Pp 1-11 (2020)
Abstract Background The gut microbiome harbors trillions of bacteria that play a major role in dietary nutrient extraction and host metabolism. Metabolic diseases such as obesity and diabetes are associated with shifts in microbiome composition and h
Externí odkaz:
https://doaj.org/article/ac4915b761424c8ab9f91ae050147814
Autor:
Maya O. Wills, Robin R. Shields-Cutler, Emily Brunmeier, Madison Weissenborn, Tami Murphy, Dan Knights, Timothy J. Johnson, Jonathan B. Clayton
Publikováno v:
Diversity, Vol 14, Iss 9, p 715 (2022)
Vast numbers of microorganisms inhabit the mammalian gastrointestinal tract in a complex community referred to as the gut microbiome. An individual’s microbiome may be impacted by genetics, diet, and various environmental factors, and has been asso
Externí odkaz:
https://doaj.org/article/9c451412e6bb4b78b7216bbf7498b298
Autor:
George B. Saffouri, Robin R. Shields-Cutler, Jun Chen, Yi Yang, Heather R. Lekatz, Vanessa L. Hale, Janice M. Cho, Eric J. Battaglioli, Yogesh Bhattarai, Kevin J. Thompson, Krishna K. Kalari, Gaurav Behera, Jonathan C. Berry, Stephanie A. Peters, Robin Patel, Audrey N. Schuetz, Jeremiah J. Faith, Michael Camilleri, Justin L. Sonnenburg, Gianrico Farrugia, Jonathan R. Swann, Madhusudan Grover, Dan Knights, Purna C. Kashyap
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-11 (2019)
Small intestinal bacterial overgrowth (SIBO) has been associated with functional gastrointestinal disorders. Here, the authors show that SIBO may be a result of dietary preferences, and patient symptoms correlate with changes in small intestinal micr
Externí odkaz:
https://doaj.org/article/32a844355ed94b92862ae083fcfb70df
Autor:
Armin Rashidi, Maryam Ebadi, Robin R Shields-Cutler, Kathryn Kruziki, Dawn A Manias, Aaron M T Barnes, Todd E DeFor, Patricia Ferrieri, Jo-Anne H Young, Dan Knights, Bruce R Blazar, Daniel J Weisdorf, Gary M Dunny
Publikováno v:
PLoS ONE, Vol 14, Iss 8, p e0220850 (2019)
Gut dysbiosis has been associated with worse allogeneic hematopoietic cell transplantation (allo-HCT) outcomes. We reported an association between intrinsically vancomycin-resistant enterococci (iVRE: E. gallinarum and E. casseliflavus) gut colonizat
Externí odkaz:
https://doaj.org/article/8768e548f7e84911883974b3cd1b1356
Autor:
Benjamin Hillmann, Gabriel A. Al-Ghalith, Robin R. Shields-Cutler, Qiyun Zhu, Daryl M. Gohl, Kenneth B. Beckman, Rob Knight, Dan Knights
Publikováno v:
mSystems, Vol 3, Iss 6 (2018)
ABSTRACT Although microbial communities are associated with human, environmental, plant, and animal health, there exists no cost-effective method for precisely characterizing species and genes in such communities. While deep whole-metagenome shotgun
Externí odkaz:
https://doaj.org/article/9d6d318138994f39842dff1305e1ba5a
Autor:
Xue-Song Zhang, Jackie Li, Kimberly A Krautkramer, Michelle Badri, Thomas Battaglia, Timothy C Borbet, Hyunwook Koh, Sandy Ng, Rachel A Sibley, Yuanyuan Li, Wimal Pathmasiri, Shawn Jindal, Robin R Shields-Cutler, Ben Hillmann, Gabriel A Al-Ghalith, Victoria E Ruiz, Alexandra Livanos, Angélique B van ‘t Wout, Nabeetha Nagalingam, Arlin B Rogers, Susan Jenkins Sumner, Dan Knights, John M Denu, Huilin Li, Kelly V Ruggles, Richard Bonneau, R Anthony Williamson, Marcus Rauch, Martin J Blaser
Publikováno v:
eLife, Vol 7 (2018)
The early-life intestinal microbiota plays a key role in shaping host immune system development. We found that a single early-life antibiotic course (1PAT) accelerated type 1 diabetes (T1D) development in male NOD mice. The single course had deep and
Externí odkaz:
https://doaj.org/article/5f77e81cd4e5448cbc2595e81c061fe1
Publikováno v:
Frontiers in Microbiology, Vol 9 (2018)
Longitudinal, prospective studies often rely on multi-omics approaches, wherein various specimens are analyzed for genomic, metabolomic, and/or transcriptomic profiles. In practice, longitudinal studies in humans and other animals routinely suffer fr
Externí odkaz:
https://doaj.org/article/4a54e1633be64c6b963449eea2195f01
Autor:
Gabriel A. Al-Ghalith, Amanda E. Ramer-Tait, Dimitrios N. Sidiropoulos, Jonathan B. Clayton, Yibo Xian, Pajau Vangay, Robin R. Shields-Cutler, Purna C. Kashyap, Abigail J. Johnson, Tonya Ward, Dan Knights
Publikováno v:
Animal Microbiome, Vol 2, Iss 1, Pp 1-11 (2020)
Animal Microbiome
Animal Microbiome
Background The gut microbiome harbors trillions of bacteria that play a major role in dietary nutrient extraction and host metabolism. Metabolic diseases such as obesity and diabetes are associated with shifts in microbiome composition and have been
Autor:
Gabriel A. Al-Ghalith, Qiyun Zhu, Benjamin Hillmann, Rob Knight, Robin R. Shields-Cutler, Dan Knights
Publikováno v:
Bioinformatics
Bioinformatics (Oxford, England), vol 36, iss 13
Bioinformatics (Oxford, England), vol 36, iss 13
Summary The software pipeline SHOGUN profiles known taxonomic and gene abundances of short-read shotgun metagenomics sequencing data. The pipeline is scalable, modular and flexible. Data analysis and transformation steps can be run individually or to