Zobrazeno 1 - 10
of 25
pro vyhledávání: '"Rémi Zallot"'
Publikováno v:
Biomolecules, Vol 7, Iss 1, p 12 (2017)
Queuosine (Q) is a complex modification of the wobble base in tRNAs with GUN anticodons. The full Q biosynthesis pathway has been elucidated in Escherichia coli. FolE, QueD, QueE and QueC are involved in the conversion of guanosine triphosphate (GTP)
Externí odkaz:
https://doaj.org/article/4ce6831c4161489480d0ed4c6d58528e
Publikováno v:
Life, Vol 6, Iss 3, p 39 (2016)
Gene duplication followed by mutation is a classic mechanism of neofunctionalization, producing gene families with functional diversity. In some cases, a single point mutation is sufficient to change the substrate specificity and/or the chemistry per
Externí odkaz:
https://doaj.org/article/d4525e5578864ba6a6f125937f859b45
Autor:
Brian S. MacTavish, Rémi Zallot, You Hu, Valérie de Crécy-Lagard, Daniel J. Payan, Steven D. Bruner, Alexander Angerhofer, Alvaro Montoya, John A. Gerlt, Qiang Li
Publikováno v:
Biochemistry
Queuosine is a structurally unique and functionally important tRNA modification, widely distributed in eukaryotes and bacteria. The final step of queuosine biosynthesis is the reduction/deoxygenation of epoxyqueuosine to form the cyclopentene motif o
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::713b40f68014aab886c60bc2fced3649
https://doi.org/10.1021/acs.biochem.1c00164
https://doi.org/10.1021/acs.biochem.1c00164
Publikováno v:
Journal of Molecular Biology. :168018
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4ef00306acf92e783d4b501f040c0fff
https://doi.org/10.1016/j.jmb.2023.168018
https://doi.org/10.1016/j.jmb.2023.168018
Publikováno v:
Biochemistry
The assignment of functions to uncharacterized proteins discovered in genome projects requires easily accessible tools and computational resources for large-scale, user-friendly leveraging of the protein, genome, and metagenome databases by experimen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7b84f80bc36e074514dfc5296798ce5c
https://doi.org/10.1021/acs.biochem.9b00735
https://doi.org/10.1021/acs.biochem.9b00735
Publikováno v:
Current Opinion in Chemical Biology. 47:77-85
The protein databases contain an exponentially growing number of sequences as a result of the recent increase in ease and decrease in cost of genome sequencing. The rate of data accumulation far exceeds the rate of functional studies, producing an in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c417fd48533c3d23743de566875616a5
https://doi.org/10.1016/j.cbpa.2018.09.009
https://doi.org/10.1016/j.cbpa.2018.09.009
Autor:
Hua Huang, Matthew W. Vetting, Jason T. Bouvier, John A. Gerlt, Rémi Zallot, Agnidipta Ghosh, Xinshuai Zhang, Nawar Al-Obaidi, Michael S. Carter, Steven C. Almo, Jeffrey B. Bonanno, Brian San Francisco, Harvey M. Andersen
Publikováno v:
Nature Chemical Biology. 14:696-705
Colocation of the genes encoding ABC, TRAP, and TCT transport systems and catabolic pathways for the transported ligand provides a strategy for discovering novel microbial enzymes and pathways. We screened solute-binding proteins (SBPs) for ABC trans
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8654b798d35023748f875de320a04a70
https://doi.org/10.1038/s41589-018-0067-7
https://doi.org/10.1038/s41589-018-0067-7
Autor:
Daniel J. Payan, Sara Šepić, Steven C. Almo, Valérie de Crécy-Lagard, Peter C. Dedon, John A. Gerlt, Vinod Gadi, Manal A. Swairjo, Isabelle Martin-Verstraete, Yifeng Yuan, Seetharamsing Balamkundu, Ramesh Neelakandan, Chuan Fa Liu, Rémi Zallot, Tyler L. Grove
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America
Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2019, 116 (38), pp.19126-19135. ⟨10.1073/pnas.1909604116⟩
Proceedings of the National Academy of Sciences of the United States of America, 2019, 116 (38), pp.19126-19135. ⟨10.1073/pnas.1909604116⟩
Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2019, 116 (38), pp.19126-19135. ⟨10.1073/pnas.1909604116⟩
Proceedings of the National Academy of Sciences of the United States of America, 2019, 116 (38), pp.19126-19135. ⟨10.1073/pnas.1909604116⟩
Queuosine (Q) is a complex tRNA modification widespread in eukaryotes and bacteria that contributes to the efficiency and accuracy of protein synthesis. Eukaryotes are not capable of Q synthesis and rely on salvage of the queuine base (q) as a Q prec
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0131c772c92189bcb23ca565b10e831e
https://cronfa.swan.ac.uk/Record/cronfa53171
https://cronfa.swan.ac.uk/Record/cronfa53171
Autor:
Sanja Roje, Valérie de Crécy-Lagard, Rémi Zallot, Michael J. Ziemak, Na Sa, Jesse F. Gregory, Ghulam Hasnain, Andrew D. Hanson
Publikováno v:
Biochemical Journal. 473:157-166
The penultimate step of thiamin diphosphate (ThDP) synthesis in plants and many bacteria is dephosphorylation of thiamin monophosphate (ThMP). Non-specific phosphatases have been thought to mediate this step and no genes encoding specific ThMP phosph
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::65f0e027789d76a2ce9a9ec4363398aa
https://doi.org/10.1042/bj20150805
https://doi.org/10.1042/bj20150805
Summary The examination of gene neighborhood is an integral part of comparative genomics but no tools to produce publication quality graphics of gene clusters are available. Gene Graphics is a straightforward web application for creating such visuals
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a2308e2489269e7a8bf76444ebcb1e9f
https://cronfa.swan.ac.uk/Record/cronfa53174
https://cronfa.swan.ac.uk/Record/cronfa53174