Microbial community-scale metabolic modelling predicts personalized short-chain fatty acid production profiles in the human gut.

Autor: Quinn-Bohmann N; Institute for Systems Biology, Seattle, WA, USA.; Molecular Engineering Graduate Program, University of Washington, Seattle, WA, USA., Wilmanski T; Institute for Systems Biology, Seattle, WA, USA., Sarmiento KR; Institute for Systems Biology, Seattle, WA, USA., Levy L; Fred Hutchinson Cancer Center, Seattle, WA, USA., Lampe JW; Fred Hutchinson Cancer Center, Seattle, WA, USA., Gurry T; Pharmaceutical Biochemistry Group, School of Pharmaceutical Sciences, University of Geneva, Geneva, Switzerland.; Myota GmbH, Berlin, Germany., Rappaport N; Center for Phenomic Health, Buck Institute for Research on Aging, Novato, CA, USA., Ostrem EM; Department of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA., Venturelli OS; Department of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.; Department of Biomedical Engineering, University of Wisconsin-Madison, Madison, WI, USA.; Department of Chemical & Biological Engineering, University of Wisconsin-Madison, Madison, WI, USA.; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA., Diener C; Institute for Systems Biology, Seattle, WA, USA. christian.diener@medunigraz.at.; Diagnostic and Research Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, Graz, Austria. christian.diener@medunigraz.at., Gibbons SM; Institute for Systems Biology, Seattle, WA, USA. sgibbons@isbscience.org.; Molecular Engineering Graduate Program, University of Washington, Seattle, WA, USA. sgibbons@isbscience.org.; Department of Bioengineering, University of Washington, Seattle, WA, USA. sgibbons@isbscience.org.; Department of Genome Sciences, University of Washington, Seattle, WA, USA. sgibbons@isbscience.org.; eScience Institute, University of Washington, Seattle, WA, USA. sgibbons@isbscience.org.

Publikováno v: Nature microbiology [Nat Microbiol] 2024 Jul; Vol. 9 (7), pp. 1700-1712. Date of Electronic Publication: 2024 Jun 24.

Microbial community-scale metabolic modeling predicts personalized short chain fatty acid production profiles in the human gut.

Autor: Quinn-Bohmann N; Institute for Systems Biology, Seattle, WA 98109, USA.; Molecular Engineering Graduate Program, University of Washington, Seattle, WA 98195, USA., Wilmanski T; Institute for Systems Biology, Seattle, WA 98109, USA., Sarmiento KR; Institute for Systems Biology, Seattle, WA 98109, USA., Levy L; Fred Hutchinson Cancer Center, Seattle, WA 98109, USA., Lampe JW; Fred Hutchinson Cancer Center, Seattle, WA 98109, USA., Gurry T; Pharmaceutical Biochemistry Group, School of Pharmaceutical Sciences, University of Geneva, Switzerland.; Myota GmbH, Berlin, Germany., Rappaport N; Center for Phenomic Health, Buck Institute for Research on Aging, Novato, CA 94945, USA., Ostrem EM; Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA., Venturelli OS; Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.; Department of Biomedical Engineering, University of Wisconsin-Madison, Madison, WI 53706, USA.; Department of Chemical & Biological Engineering, University of Wisconsin-Madison, Madison, WI 53706, USA.; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI 53706, USA., Diener C; Institute for Systems Biology, Seattle, WA 98109, USA., Gibbons SM; Institute for Systems Biology, Seattle, WA 98109, USA.; Molecular Engineering Graduate Program, University of Washington, Seattle, WA 98195, USA.; Department of Bioengineering, University of Washington, Seattle, WA 98195, USA.; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.; eScience Institute, University of Washington, Seattle, WA 98195, USA.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2023 Nov 28. Date of Electronic Publication: 2023 Nov 28.

Food-breastmilk combinations alter the colonic microbiome of weaning infants: an in silico study.

Autor: da Silva, Vitor G., Smith, Nick W., Mullaney, Jane A., Wall, Clare, Roy, Nicole C., McNabb, Warren C.

Publikováno v: MSystems; Sep2024, Vol. 9 Issue 9, p1-20, 20p

Protective effect of the branched short-chain fatty acid isobutyrate on intestinal damage in weaned piglets through intestinal microbiota remodeling.

Autor: Fang X; College of Animal Science and Technology, Northeast Agricultural University, Harbin, People's Republic of China., Wang Z; College of Animal Science and Technology, Northeast Agricultural University, Harbin, People's Republic of China., Chen Q; College of Animal Science and Technology, Northeast Agricultural University, Harbin, People's Republic of China., Du Y; College of Animal Science and Technology, Northeast Agricultural University, Harbin, People's Republic of China., Sun H; College of Animal Science and Technology, Northeast Agricultural University, Harbin, People's Republic of China., Liu H; College of Animal Science and Technology, Northeast Agricultural University, Harbin, People's Republic of China., Feng Y; College of Animal Science and Technology, Northeast Agricultural University, Harbin, People's Republic of China., Li Z; College of Animal Science and Technology, Northeast Agricultural University, Harbin, People's Republic of China., Teng T; College of Animal Science and Technology, Northeast Agricultural University, Harbin, People's Republic of China., Shi B; College of Animal Science and Technology, Northeast Agricultural University, Harbin, People's Republic of China.

Publikováno v: Journal of the science of food and agriculture [J Sci Food Agric] 2024 Oct 16. Date of Electronic Publication: 2024 Oct 16.