Zobrazeno 1 - 6
of 6
pro vyhledávání: '"Quentin Ferré"'
Publikováno v:
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-26 (2021)
Abstract Background Accurate identification of Transcriptional Regulator binding locations is essential for analysis of genomic regions, including Cis Regulatory Elements. The customary NGS approaches, predominantly ChIP-Seq, can be obscured by data
Externí odkaz:
https://doaj.org/article/177889c5f407484fb6fe69b6f268bdec
Autor:
Pauline Brochet, Barbara Maria Ianni, Laurie Laugier, Amanda Farage Frade, João Paulo Silva Nunes, Priscila Camillo Teixeira, Charles Mady, Ludmila Rodrigues Pinto Ferreira, Quentin Ferré, Ronaldo Honorato Barros Santos, Andreia Kuramoto, Sandrine Cabantous, Samuel Steffen, Antonio Noedir Stolf, Pablo Pomerantzeff, Alfredo Inacio Fiorelli, Edimar Alcides Bocchi, Cristina Wide Pissetti, Bruno Saba, Darlan da Silva Cândido, Fabrício C. Dias, Marcelo Ferraz Sampaio, Fabio Antônio Gaiotto, José Antonio Marin-Neto, Abílio Fragata, Ricardo Costa Fernandes Zaniratto, Sergio Siqueira, Giselle De Lima Peixoto, Vagner Oliveira-Carvalho Rigaud, Fernando Bacal, Paula Buck, Rafael Ribeiro Almeida, Hui Tzu Lin-Wang, André Schmidt, Martino Martinelli, Mario Hiroyuki Hirata, Eduardo Antonio Donadi, Alexandre Costa Pereira, Virmondes Rodrigues Junior, Denis Puthier, Jorge Kalil, Lionel Spinelli, Edecio Cunha-Neto, Christophe Chevillard
Publikováno v:
Frontiers in Immunology, Vol 13 (2022)
Chagas disease, caused by the protozoan Trypanosoma cruzi, is an endemic parasitic disease of Latin America, affecting 7 million people. Although most patients are asymptomatic, 30% develop complications, including the often-fatal Chronic Chagasic Ca
Externí odkaz:
https://doaj.org/article/65fdda843b04496390e425c5897c4f93
Autor:
Saadat Hussain, Nori Sadouni, Dominic van Essen, Lan T M Dao, Quentin Ferré, Guillaume Charbonnier, Magali Torres, Frederic Gallardo, Charles-Henri Lecellier, Tom Sexton, Simona Saccani, Salvatore Spicuglia
Publikováno v:
Nucleic Acids Research
Nucleic Acids Research, 2023, 51 (10), pp.4845-4866. ⟨10.1093/nar/gkad187⟩
Nucleic Acids Research, 2023, 51 (10), pp.4845-4866. ⟨10.1093/nar/gkad187⟩
The action of cis-regulatory elements with either activation or repression functions underpins the precise regulation of gene expression during normal development and cell differentiation. Gene activation by the combined activities of promoters and d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f251cd5a4a94c26385ec4ca6a5de3b35
https://cnrs.hal.science/hal-04044391
https://cnrs.hal.science/hal-04044391
Autor:
Pauline Brochet, Barbara Ianni, Laurie Laugier, Amanda Farage Frade, João Paulo Silva Nunes, Priscila Camillo Teixeira, Charles Mady, Ludmila Rodrigues Pinto Ferreira, Quentin Ferré, Ronaldo Honorato Barros Santos, Andreia Kuramoto, Sandrine Cabantous, Samuel Steffen, Antonio Noedir Stolf, Pablo Pomerantzeff, Alfredo Inacio Fiorelli, Edimar A Bocchi, Cristina Wide Pissetti, Bruno Saba, Darlan da Silva Cândido, Fabrício Dias, Marcelo Sampaio, Fabio Antônio Gaiotto, José Antonio Marin-Neto, Abílio Fragata, Ricardo Costa Fernandes Zaniratto, Sergio Siqueira, Giselle de lima Peixoto, Vagner Oliveira-Carvalho Rigaud, Fernando Bacal, Paula Buck, Rafael Almeida Ribeiro, Hui Tzu Lin-Wang, André Schmidt, Martino Martinelli, Mario Hiroyuki Hirata, Eduardo Donadi, Alexandre Costa Pereira, Virmondes Rodrigues, Denis Puthier, Jorge Kalil, Lionel Spinelli, Edecio Cunha-Neto, Christophe Chevillard
Chagas disease, caused by Trypanosoma cruzi, is an endemic parasitical disease of Latin America, affecting 7 million people. Although most patients are asymptomatic, 30% develop complications, including Chronic Chagasic Cardiomyopathy (CCC), which ra
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::45ffcdb8aaeab4bdf63e687666ed69ac
https://doi.org/10.1101/2021.12.20.21267972
https://doi.org/10.1101/2021.12.20.21267972
Autor:
Cécile Capponi, Frédéric Lopez, Nori Sadouni, Badih Ghattas, Denis Puthier, Salvatore Spicuglia, Yasmina Kermezli, Guillaume Charbonnier, Quentin Ferré
Publikováno v:
Bioinformatics
Bioinformatics, Oxford University Press (OUP), 2020, ⟨10.1093/bioinformatics/btz810⟩
Bioinformatics, Oxford University Press (OUP), 2019, ⟨10.1093/bioinformatics/btz810⟩
Bioinformatics, 2020, ⟨10.1093/bioinformatics/btz810⟩
Bioinformatics, 2019, ⟨10.1093/bioinformatics/btz810⟩
Bioinformatics, Oxford University Press (OUP), 2020, ⟨10.1093/bioinformatics/btz810⟩
Bioinformatics, Oxford University Press (OUP), 2019, ⟨10.1093/bioinformatics/btz810⟩
Bioinformatics, 2020, ⟨10.1093/bioinformatics/btz810⟩
Bioinformatics, 2019, ⟨10.1093/bioinformatics/btz810⟩
Motivation Various bioinformatics analyses provide sets of genomic coordinates of interest. Whether two such sets possess a functional relation is a frequent question. This is often determined by interpreting the statistical significance of their ove
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e82f3947f201d82516a58ae20845905e
https://hal-amu.archives-ouvertes.fr/hal-02383808/document
https://hal-amu.archives-ouvertes.fr/hal-02383808/document
Autor:
N. Zweig, Aitor González, Frédéric Lopez, Salvatore Spicuglia, Mourad Aribi, Mohamed Belhocine, Quentin Ferré, Denis Puthier, Yasmina Kermezli, Guillaume Charbonnier
Publikováno v:
Bioinformatics
Bioinformatics, Oxford University Press (OUP), 2019, ⟨10.1093/bioinformatics/btz116⟩
Bioinformatics, Oxford University Press (OUP), 2019, ⟨10.1093/bioinformatics/btz116⟩
Motivation While Python has become very popular in bioinformatics, a limited number of libraries exist for fast manipulation of gene coordinates in Ensembl GTF format. Results We have developed the GTF toolkit Python package (pygtftk), which aims at
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0cb578dbd7b81f180455929b3427ad94
https://hal-amu.archives-ouvertes.fr/hal-02078147
https://hal-amu.archives-ouvertes.fr/hal-02078147