Health Record Hiccups - 5526 real-world time series with change points labelled by crowd-sourced visual inspection

Autor: Quan, TP, Lacey, B, Peto, TEA, Walker, AS

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______1064::4e95df9c97ae8acd01bea28019bfb8fd
https://ora.ox.ac.uk/objects/uuid:ba4a1b50-3326-411a-b038-6c30d4e718e6

daiquiri: Data Quality Reporting for Temporal Datasets

Autor: Quan, TP

Publikováno v: Journal of Open Source Software. 7:5034

The daiquiri R package generates data quality reports that enable quick visual review of temporal shifts in record-level data. It is designed with electronic health records in mind, but can be used for any type of record-level temporal data (i.e. tab

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c71fb5536c845e24f88803a288ed565e
https://doi.org/10.21105/joss.05034

Epidemiology of Clostridium difficile in infants in Oxfordshire, UK: risk factors for colonization and carriage, and genetic overlap with regional C. difficile infection strains

Autor: Stoesser, N, Eyre, DW, Quan, TP, Godwin, H, Pill, G, Mbuvi, E, Vaughan, A, Griffiths, D, Martin, J, Fawley, W, Dingle, KE, Oakley, S, Wanelik, K, Finney, JM, Kachrimanidou, M, Moore, CE, Gorbach, S, Riley, TV, Crook, DW, Peto, TEA, Wilcox, MH, Walker, AS

Publikováno v: PLoS ONE

Background: Approximately 30-40% of children

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::67f023518385dd69e3d528a7e29c3e32
https://ora.ox.ac.uk/objects/uuid:84b2af70-ae97-4956-8fa5-76a7531f52d0

Genomic epidemiology and longitudinal sampling of ward wastewater environments and patients reveals complexity of the transmission dynamics of bla KPC -carbapenemase-producing Enterobacterales in a hospital setting.

Autor: Stoesser N; Nuffield Department of Medicine, University of Oxford, Oxford, UK.; NIHR Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance at University of Oxford in partnership with Public Health England, Nuffield Department of Medicine, Oxford, UK.; NIHR Oxford Biomedical Research Centre, Oxford University Hospitals NHS Foundation Trust, John Radcliffe Hospital, Oxford, UK., George R; Department of Microbiology, Manchester University NHS Foundation Trust, Manchester, UK., Aiken Z; Department of Microbiology, Manchester University NHS Foundation Trust, Manchester, UK., Phan HTT; Academic Unit of Clinical and Experimental Sciences, University of Southampton, Southampton, UK., Lipworth S; Nuffield Department of Medicine, University of Oxford, Oxford, UK., Quan TP; Nuffield Department of Medicine, University of Oxford, Oxford, UK.; NIHR Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance at University of Oxford in partnership with Public Health England, Nuffield Department of Medicine, Oxford, UK., Mathers AJ; Department of Pathology, University of Virginia School of Medicine, Charlottesville, VA, USA., De Maio N; Goldman Group, EMBL-European Bioinformatics Institute, Cambridge, UK., Seale AC; Warwick Medical School - Health Sciences, University of Warwick, Coventry, UK., Eyre DW; Nuffield Department of Medicine, University of Oxford, Oxford, UK.; NIHR Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance at University of Oxford in partnership with Public Health England, Nuffield Department of Medicine, Oxford, UK.; NIHR Oxford Biomedical Research Centre, Oxford University Hospitals NHS Foundation Trust, John Radcliffe Hospital, Oxford, UK., Vaughan A; Nuffield Department of Medicine, University of Oxford, Oxford, UK., Swann J; Nuffield Department of Medicine, University of Oxford, Oxford, UK., Peto TEA; Nuffield Department of Medicine, University of Oxford, Oxford, UK.; NIHR Oxford Biomedical Research Centre, Oxford University Hospitals NHS Foundation Trust, John Radcliffe Hospital, Oxford, UK., Crook DW; Nuffield Department of Medicine, University of Oxford, Oxford, UK.; NIHR Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance at University of Oxford in partnership with Public Health England, Nuffield Department of Medicine, Oxford, UK.; NIHR Oxford Biomedical Research Centre, Oxford University Hospitals NHS Foundation Trust, John Radcliffe Hospital, Oxford, UK., Cawthorne J; Department of Microbiology, Manchester University NHS Foundation Trust, Manchester, UK., Dodgson A; Department of Microbiology, Manchester University NHS Foundation Trust, Manchester, UK., Walker AS; Nuffield Department of Medicine, University of Oxford, Oxford, UK.; NIHR Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance at University of Oxford in partnership with Public Health England, Nuffield Department of Medicine, Oxford, UK.; NIHR Oxford Biomedical Research Centre, Oxford University Hospitals NHS Foundation Trust, John Radcliffe Hospital, Oxford, UK.

Publikováno v: JAC-antimicrobial resistance [JAC Antimicrob Resist] 2024 Sep 03; Vol. 6 (5), pp. dlae140. Date of Electronic Publication: 2024 Sep 03 (Print Publication: 2024).

Penicillin Binding Protein Substitutions Cooccur with Fluoroquinolone Resistance in Epidemic Lineages of Multidrug-Resistant Clostridioides difficile.

Autor: Dingle KE; Nuffield Department of Clinical Medicine, John Radcliffe Hospital, Oxford University, Oxford, United Kingdom.; National Institute for Health Research (NIHR) Oxford Biomedical Research Centre, John Radcliffe Hospital, Oxford, United Kingdom., Freeman J; Department of Microbiology, Leeds Teaching Hospitals Trust, Leeds, United Kingdom.; Healthcare Associated Infections Research Group, The Leeds Institute of Medical Research, University of Leeds, Leeds, United Kingdom., Didelot X; School of Life Sciences and Department of Statistics, University of Warwick, Coventry, United Kingdom., Quan TP; Nuffield Department of Clinical Medicine, John Radcliffe Hospital, Oxford University, Oxford, United Kingdom.; National Institute for Health Research (NIHR) Oxford Biomedical Research Centre, John Radcliffe Hospital, Oxford, United Kingdom., Eyre DW; National Institute for Health Research (NIHR) Oxford Biomedical Research Centre, John Radcliffe Hospital, Oxford, United Kingdom.; Big Data Institute, Nuffield Department of Population Health, Oxford University of Oxford, Oxford, United Kingdom., Swann J; Nuffield Department of Clinical Medicine, John Radcliffe Hospital, Oxford University, Oxford, United Kingdom.; National Institute for Health Research (NIHR) Oxford Biomedical Research Centre, John Radcliffe Hospital, Oxford, United Kingdom., Spittal WD; Department of Microbiology, Leeds Teaching Hospitals Trust, Leeds, United Kingdom.; Healthcare Associated Infections Research Group, The Leeds Institute of Medical Research, University of Leeds, Leeds, United Kingdom., Clark EV; Department of Microbiology, Leeds Teaching Hospitals Trust, Leeds, United Kingdom.; Healthcare Associated Infections Research Group, The Leeds Institute of Medical Research, University of Leeds, Leeds, United Kingdom., Jolley KA; Department of Biology, University of Oxford, Oxford, United Kingdom., Walker AS; Nuffield Department of Clinical Medicine, John Radcliffe Hospital, Oxford University, Oxford, United Kingdom.; National Institute for Health Research (NIHR) Oxford Biomedical Research Centre, John Radcliffe Hospital, Oxford, United Kingdom., Wilcox MH; Department of Microbiology, Leeds Teaching Hospitals Trust, Leeds, United Kingdom.; Healthcare Associated Infections Research Group, The Leeds Institute of Medical Research, University of Leeds, Leeds, United Kingdom., Crook DW; Nuffield Department of Clinical Medicine, John Radcliffe Hospital, Oxford University, Oxford, United Kingdom.; National Institute for Health Research (NIHR) Oxford Biomedical Research Centre, John Radcliffe Hospital, Oxford, United Kingdom.

Publikováno v: MBio [mBio] 2023 Apr 25; Vol. 14 (2), pp. e0024323. Date of Electronic Publication: 2023 Apr 05.