Zobrazeno 1 - 10
of 235
pro vyhledávání: '"Qiyun Zhu"'
Autor:
Mikyeong Lee, Abhishek Kaul, James M. Ward, Qiyun Zhu, Marie Richards, Ziyue Wang, Antonio González, Christine G. Parks, Laura E. Beane Freeman, David M. Umbach, Alison A. Motsinger-Reif, Rob Knight, Stephanie J. London
Publikováno v:
Microbiome, Vol 12, Iss 1, Pp 1-14 (2024)
Abstract Background Chronic exposure to microorganisms inside homes can impact respiratory health. Few studies have used advanced sequencing methods to examine adult respiratory outcomes, especially continuous measures. We aimed to identify metagenom
Externí odkaz:
https://doaj.org/article/97747b8b6c014deea62feb192a18484e
Autor:
Henry Secaira-Morocho, Abhinav Chede, Luis Gonzalez-de-Salceda, Ferran Garcia-Pichel, Qiyun Zhu
Publikováno v:
Cell Reports, Vol 43, Iss 6, Pp 114268- (2024)
Summary: We investigate the distribution and evolution of prokaryotic cell size based on a compilation of 5,380 species. Size spans four orders of magnitude, from 100 nm (Mycoplasma) to more than 1 cm (Thiomargarita); however, most species congregate
Externí odkaz:
https://doaj.org/article/f2e655ab182c4d52af245d134059d83f
Autor:
Jessica A. Griffiths, Bryan B. Yoo, Peter Thuy-Boun, Victor J. Cantu, Kelly C. Weldon, Collin Challis, Michael J. Sweredoski, Ken Y. Chan, Taren M. Thron, Gil Sharon, Annie Moradian, Gregory Humphrey, Qiyun Zhu, Justin P. Shaffer, Dennis W. Wolan, Pieter C. Dorrestein, Rob Knight, Viviana Gradinaru, Sarkis K. Mazmanian
Publikováno v:
Cell Reports, Vol 43, Iss 4, Pp 113953- (2024)
Summary: The gastrointestinal (GI) tract is innervated by intrinsic neurons of the enteric nervous system (ENS) and extrinsic neurons of the central nervous system and peripheral ganglia. The GI tract also harbors a diverse microbiome, but interactio
Externí odkaz:
https://doaj.org/article/8903257bb5ea472f893d149c894884a6
Publikováno v:
Microbiome, Vol 11, Iss 1, Pp 1-14 (2023)
Abstract Background Exploring metagenomic contigs and “binning” them into metagenome-assembled genomes (MAGs) are essential for the delineation of functional and evolutionary guilds within microbial communities. Despite the advances in automated
Externí odkaz:
https://doaj.org/article/57c65705fe9740cdb1dbf9283643eb68
Autor:
Ting Fu, Tao Huan, Gibraan Rahman, Hui Zhi, Zhenjiang Xu, Tae Gyu Oh, Jian Guo, Sally Coulter, Anupriya Tripathi, Cameron Martino, Justin L. McCarville, Qiyun Zhu, Fritz Cayabyab, Brian Low, Mingxiao He, Shipei Xing, Fernando Vargas, Ruth T. Yu, Annette Atkins, Christopher Liddle, Janelle Ayres, Manuela Raffatellu, Pieter C. Dorrestein, Michael Downes, Rob Knight, Ronald M. Evans
Publikováno v:
Cell Reports, Vol 42, Iss 8, Pp 112997- (2023)
Summary: Colorectal cancer (CRC) is driven by genomic alterations in concert with dietary influences, with the gut microbiome implicated as an effector in disease development and progression. While meta-analyses have provided mechanistic insight into
Externí odkaz:
https://doaj.org/article/958122a9c5d843b58513ee7535fcecb3
Autor:
Ziyue Wang, Kathryn R. Dalton, Mikyeong Lee, Christine G. Parks, Laura E. Beane Freeman, Qiyun Zhu, Antonio González, Rob Knight, Shanshan Zhao, Alison A. Motsinger-Reif, Stephanie J. London
Publikováno v:
Frontiers in Microbiology, Vol 14 (2023)
Indoor home dust microbial communities, important contributors to human health, are shaped by environmental factors, including farm-related exposures. Advanced metagenomic whole genome shotgun sequencing (WGS) improves detection and characterization
Externí odkaz:
https://doaj.org/article/26f6cd3021e6473496908dfe90a8e042
Autor:
Carlos G. Gonzalez, Robert H. Mills, Qiyun Zhu, Consuelo Sauceda, Rob Knight, Parambir S. Dulai, David J. Gonzalez
Publikováno v:
Microbiome, Vol 10, Iss 1, Pp 1-15 (2022)
Abstract Background Crohn’s disease (CD), an inflammatory bowel disease (IBD) subtype, results from pathologic interactions between host cells and its resident gut microbes. CD manifests in both isolated disease locations (ileum or colon) or a comb
Externí odkaz:
https://doaj.org/article/c002634b272f4059b314465e7c609725
Autor:
Paniz Jasbi, Alex E. Mohr, Xiaojian Shi, Tara Mahmood, Qiyun Zhu, Meg Bruening, Haiwei Gu, Corrie Whisner
Publikováno v:
Scientific Reports, Vol 12, Iss 1, Pp 1-17 (2022)
Abstract As screens are increasingly integrated into every facet of modern life, there is growing concern over the potential effects of high screen time. Previous studies have largely utilized self-report data on mood and behavioral aspects of screen
Externí odkaz:
https://doaj.org/article/d89d468d3f0845e2a6b1a43666379fd0
Autor:
Carlos G. Gonzalez, Robert H. Mills, Melissa C. Kordahi, Marvic Carrillo-Terrazas, Henry Secaira-Morocho, Christella E. Widjaja, Matthew S. Tsai, Yash Mittal, Brian A. Yee, Fernando Vargas, Kelly Weldon, Julia M. Gauglitz, Clara Delaroque, Consuelo Sauceda, Leigh-Ana Rossitto, Gail Ackermann, Gregory Humphrey, Austin D. Swafford, Corey A. Siegel, Jay C. Buckey, Jr., Laura E. Raffals, Charlotte Sadler, Peter Lindholm, Kathleen M. Fisch, Mark Valaseck, Arief Suriawinata, Gene W. Yeo, Pradipta Ghosh, John T. Chang, Hiutung Chu, Pieter Dorrestein, Qiyun Zhu, Benoit Chassaing, Rob Knight, David J. Gonzalez, Parambir S. Dulai
Publikováno v:
Cellular and Molecular Gastroenterology and Hepatology, Vol 14, Iss 1, Pp 35-53 (2022)
Background & Aims: Hyperbaric oxygen therapy (HBOT) is a promising treatment for moderate-to-severe ulcerative colitis. However, our current understanding of the host and microbial response to HBOT remains unclear. This study examined the molecular m
Externí odkaz:
https://doaj.org/article/f12abfe4e4f44987a022d512ae5ef9c1
Autor:
Daniel Hakim, Stephen Wandro, Karsten Zengler, Livia S. Zaramela, Brent Nowinski, Austin Swafford, Qiyun Zhu, Se Jin Song, Antonio Gonzalez, Daniel McDonald, Rob Knight
Publikováno v:
mSystems, Vol 7, Iss 5 (2022)
ABSTRACT Assigning taxonomy remains a challenging topic in microbiome studies, due largely to ambiguity of reads which overlap multiple reference genomes. With the Web of Life (WoL) reference database hosting 10,575 reference genomes and growing, the
Externí odkaz:
https://doaj.org/article/eecc9545c0544bd6bcd9a83695bfda89