Zobrazeno 1 - 10
of 10
pro vyhledávání: '"Qing-Feng Wen"'
Autor:
Cheng-Yu Wang, Qing-Feng Wen, Qiao-Qiao Wang, Xia Kuang, Chuan Dong, Zi-Xin Deng, Feng-Biao Guo
Publikováno v:
Frontiers in Microbiology, Vol 13 (2022)
The beneficial metabolites of the microbiome could be used as a tool for screening drugs that have the potential for the therapy of various human diseases. Narrowing down the range of beneficial metabolite candidates in specific diseases was primaril
Externí odkaz:
https://doaj.org/article/a6130e16b4154a72b57a929909977377
Publikováno v:
Frontiers in Microbiology, Vol 10 (2019)
Geptop has performed effectively in the identification of prokaryotic essential genes since its first release in 2013. It estimates gene essentiality for prokaryotes based on orthology and phylogeny. Genome-scale essentiality data of more prokaryotic
Externí odkaz:
https://doaj.org/article/d110b55a51e8406ab2d9a7d97363ec6e
Publikováno v:
Methods in Molecular Biology ISBN: 9781071617199
Computational tool composites alternative way to identify essential genes and it is low-cost and time-efficient. Based on experimental essentiality sets deposited in the databases DEG and OGEE as reference, we developed an automatically computational
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ab0b1486b3a007beb8f93879773f977b
https://doi.org/10.1007/978-1-0716-1720-5_23
https://doi.org/10.1007/978-1-0716-1720-5_23
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2377
Computational tool composites alternative way to identify essential genes and it is low-cost and time-efficient. Based on experimental essentiality sets deposited in the databases DEG and OGEE as reference, we developed an automatically computational
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::c77e69ddc83fc7e759f6f9e4295efd68
https://pubmed.ncbi.nlm.nih.gov/34709630
https://pubmed.ncbi.nlm.nih.gov/34709630
Autor:
Chuan Dong, Meng-Ze Du, Feng-Biao Guo, Nini Rao, Zhi Zeng, Yan Sun, Yi-Zhou Gao, Qing-Feng Wen, Dong-Kai Pu, Shuo Liu, Jian Huang
Publikováno v:
FEBS Letters. 593:2646-2654
In prokaryotes, Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) and CRISPR-associated protein (Cas) systems constitute adaptive immune systems against mobile genetic elements (MGEs). Here, we introduce the Markov cluster algorithm
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7179a1744e90438ea096babfad58a52e
https://doi.org/10.1002/1873-3468.13519
https://doi.org/10.1002/1873-3468.13519
Anti-CRISPR proteins (Acrs) can suppress the activity of CRISPR-Cas systems. Some viruses depend on Acrs to expand their genetic materials into the host genome which can promote species diversity. Therefore, the identification and determination of Ac
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::686118d02b1497f608ea9034e7d6c898
https://doi.org/10.1101/2020.05.23.112011
https://doi.org/10.1101/2020.05.23.112011
Autor:
Shuo Liu, Chuan Dong, Juanjuan Kang, Feng-Biao Guo, Lifeng Xiong, Jian Huang, Meng-Ze Du, Qing-Feng Wen
Publikováno v:
Environmental Microbiology. 20:3836-3850
To better understand the mechanisms of bacterial adaptation in oxygen environments, we explored the aerobic living-associated genes in bacteria by comparing Clusters of Orthologous Groups of proteins' (COGs) frequencies and gene expression analyses a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::5bbc702a2ec2fab4cdc50dc5ec1b2b62
https://doi.org/10.1111/1462-2920.14399
https://doi.org/10.1111/1462-2920.14399
Publikováno v:
Frontiers in Microbiology, Vol 10 (2019)
Frontiers in Microbiology
Frontiers in Microbiology
Geptop has performed effectively in the identification of prokaryotic essential genes since its first release in 2013. It estimates gene essentiality for prokaryotes based on orthology and phylogeny. Genome-scale essentiality data of more prokaryotic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2a50f5ec999f2f92d08d4992d53ec572
https://doi.org/10.3389/fmicb.2019.01236
https://doi.org/10.3389/fmicb.2019.01236
Publikováno v:
Briefings in Bioinformatics.
Essential genes have attracted increasing attention in recent years due to the important functions of these genes in organisms. Among the methods used to identify the essential genes, accurate and efficient computational methods can make up for the d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5a0ddbc1b8ff21c77e45de0bc7caf3a4
https://doi.org/10.1093/bib/bby116
https://doi.org/10.1093/bib/bby116
Autor:
Yi-Zhou Gao, Shuo Liu, Feng-Biao Guo, Zhi Zeng, Chuan Dong, Qing-Feng Wen, Zhen Liao, Jian Huang, Nini Rao, Meng-Ze Du
CRISPR-Cas systems are prevalent in bacterial and archaeal genomes, and these systems provide a powerful adaptive immune system against predation by phages and other mobile genetic elements (MGEs). They also contribute to other functions, such as gen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9817e518edf5342944b9ebd9dd6642f9