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Autor:
Rhie A; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., McCarthy SA; Department of Genetics, University of Cambridge, Cambridge, UK.; Wellcome Sanger Institute, Cambridge, UK., Fedrigo O; Vertebrate Genome Lab, The Rockefeller University, New York, NY, USA., Damas J; The Genome Center, University of California Davis, Davis, CA, USA., Formenti G; Vertebrate Genome Lab, The Rockefeller University, New York, NY, USA.; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA., Koren S; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Uliano-Silva M; Leibniz Institute for Zoo and Wildlife Research, Department of Evolutionary Genetics, Berlin, Germany.; Berlin Center for Genomics in Biodiversity Research, Berlin, Germany., Chow W; Wellcome Sanger Institute, Cambridge, UK., Fungtammasan A; DNAnexus Inc., Mountain View, CA, USA., Kim J; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea., Lee C; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea., Ko BJ; Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea., Chaisson M; University of Southern California, Los Angeles, CA, USA., Gedman GL; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA., Cantin LJ; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA., Thibaud-Nissen F; National Center for Biotechnology Information, National Library of Medicine, NIH, Bethesda, MD, USA., Haggerty L; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, UK., Bista I; Department of Genetics, University of Cambridge, Cambridge, UK.; Wellcome Sanger Institute, Cambridge, UK., Smith M; Wellcome Sanger Institute, Cambridge, UK., Haase B; Vertebrate Genome Lab, The Rockefeller University, New York, NY, USA., Mountcastle J; Vertebrate Genome Lab, The Rockefeller University, New York, NY, USA., Winkler S; Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.; DRESDEN-concept Genome Center, Dresden, Germany., Paez S; Vertebrate Genome Lab, The Rockefeller University, New York, NY, USA.; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA., Howard J; Novogene, Durham, NC, USA., Vernes SC; Neurogenetics of Vocal Communication Group, Max Planck Institute for Psycholinguistics, Nijmegen, The Netherlands.; Donders Institute for Brain, Cognition and Behaviour, Nijmegen, The Netherlands.; School of Biology, University of St Andrews, St Andrews, UK., Lama TM; University of Massachusetts Cooperative Fish and Wildlife Research Unit, Amherst, MA, USA., Grutzner F; School of Biological Science, The Environment Institute, University of Adelaide, Adelaide, South Australia, Australia., Warren WC; Bond Life Sciences Center, University of Missouri, Columbia, MO, USA., Balakrishnan CN; Department of Biology, East Carolina University, Greenville, NC, USA., Burt D; UQ Genomics, University of Queensland, Brisbane, Queensland, Australia., George JM; Department of Biological Sciences, Clemson University, Clemson, SC, USA., Biegler MT; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA., Iorns D; The Genetic Rescue Foundation, Wellington, New Zealand., Digby A; Kākāpō Recovery, Department of Conservation, Invercargill, New Zealand., Eason D; Kākāpō Recovery, Department of Conservation, Invercargill, New Zealand., Robertson B; Department of Zoology, University of Otago, Dunedin, New Zealand., Edwards T; University of Arizona Genetics Core, Tucson, AZ, USA., Wilkinson M; Department of Life Sciences, Natural History Museum, London, UK., Turner G; School of Natural Sciences, Bangor University, Gwynedd, UK., Meyer A; Department of Biology, University of Konstanz, Konstanz, Germany., Kautt AF; Department of Biology, University of Konstanz, Konstanz, Germany.; Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA., Franchini P; Department of Biology, University of Konstanz, Konstanz, Germany., Detrich HW 3rd; Department of Marine and Environmental Sciences, Northeastern University Marine Science Center, Nahant, MA, USA., Svardal H; Department of Biology, University of Antwerp, Antwerp, Belgium.; Naturalis Biodiversity Center, Leiden, The Netherlands., Wagner M; Institute of Biology, Karl-Franzens University of Graz, Graz, Austria., Naylor GJP; Florida Museum of Natural History, University of Florida, Gainesville, FL, USA., Pippel M; Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.; Center for Systems Biology, Dresden, Germany., Malinsky M; Wellcome Sanger Institute, Cambridge, UK.; Zoological Institute, University of Basel, Basel, Switzerland., Mooney M; Tag.bio, San Francisco, CA, USA., Simbirsky M; DNAnexus Inc., Mountain View, CA, USA., Hannigan BT; DNAnexus Inc., Mountain View, CA, USA., Pesout T; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA., Houck M; San Diego Zoo Global, Escondido, CA, USA., Misuraca A; San Diego Zoo Global, Escondido, CA, USA., Kingan SB; Pacific Biosciences, Menlo Park, CA, USA., Hall R; Pacific Biosciences, Menlo Park, CA, USA., Kronenberg Z; Pacific Biosciences, Menlo Park, CA, USA., Sović I; Pacific Biosciences, Menlo Park, CA, USA.; Digital BioLogic, Ivanić-Grad, Croatia., Dunn C; Pacific Biosciences, Menlo Park, CA, USA., Ning Z; Wellcome Sanger Institute, Cambridge, UK., Hastie A; Bionano Genomics, San Diego, CA, USA., Lee J; Bionano Genomics, San Diego, CA, USA., Selvaraj S; Arima Genomics, San Diego, CA, USA., Green RE; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA.; Dovetail Genomics, Santa Cruz, CA, USA., Putnam NH; Independent Researcher, Santa Cruz, CA, USA., Gut I; CNAG-CRG, Centre for Genomic Regulation, Barcelona Institute of Science and Technology, Barcelona, Spain.; Universitat Pompeu Fabra, Barcelona, Spain., Ghurye J; Dovetail Genomics, Santa Cruz, CA, USA.; Department of Computer Science, University of Maryland College Park, College Park, MD, USA., Garrison E; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA., Sims Y; Wellcome Sanger Institute, Cambridge, UK., Collins J; Wellcome Sanger Institute, Cambridge, UK., Pelan S; Wellcome Sanger Institute, Cambridge, UK., Torrance J; Wellcome Sanger Institute, Cambridge, UK., Tracey A; Wellcome Sanger Institute, Cambridge, UK., Wood J; Wellcome Sanger Institute, Cambridge, UK., Dagnew RE; University of Southern California, Los Angeles, CA, USA., Guan D; Department of Genetics, University of Cambridge, Cambridge, UK.; School of Computer Science and Technology, Center for Bioinformatics, Harbin Institute of Technology, Harbin, China., London SE; Department of Psychology, Institute for Mind and Biology, University of Chicago, Chicago, IL, USA., Clayton DF; Department of Genetics and Biochemistry, Clemson University, Clemson, SC, USA., Mello CV; Department of Behavioral Neuroscience, Oregon Health and Science University, Portland, OR, USA., Friedrich SR; Department of Behavioral Neuroscience, Oregon Health and Science University, Portland, OR, USA., Lovell PV; Department of Behavioral Neuroscience, Oregon Health and Science University, Portland, OR, USA., Osipova E; Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.; Center for Systems Biology, Dresden, Germany.; Max Planck Institute for the Physics of Complex Systems, Dresden, Germany., Al-Ajli FO; Monash University Malaysia Genomics Facility, School of Science, Selangor Darul Ehsan, Malaysia.; Tropical Medicine and Biology Multidisciplinary Platform, Monash University Malaysia, Selangor Darul Ehsan, Malaysia.; Qatar Falcon Genome Project, Doha, Qatar., Secomandi S; Department of Biosciences, University of Milan, Milan, Italy., Kim H; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea.; Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea.; eGnome, Inc., Seoul, Republic of Korea., Theofanopoulou C; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA., Hiller M; LOEWE Centre for Translational Biodiversity Genomics, Frankfurt, Germany.; Senckenberg Research Institute, Frankfurt, Germany.; Goethe-University, Faculty of Biosciences, Frankfurt, Germany., Zhou Y; BGI-Shenzhen, Shenzhen, China., Harris RS; Department of Biology, Pennsylvania State University, University Park, PA, USA., Makova KD; Department of Biology, Pennsylvania State University, University Park, PA, USA.; Center for Medical Genomics, Pennsylvania State University, University Park, PA, USA.; Center for Computational Biology and Bioinformatics, Pennsylvania State University, University Park, PA, USA., Medvedev P; Center for Medical Genomics, Pennsylvania State University, University Park, PA, USA.; Center for Computational Biology and Bioinformatics, Pennsylvania State University, University Park, PA, USA.; Department of Computer Science and Engineering, Pennsylvania State University, University Park, PA, USA.; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA., Hoffman J; National Center for Biotechnology Information, National Library of Medicine, NIH, Bethesda, MD, USA., Masterson P; National Center for Biotechnology Information, National Library of Medicine, NIH, Bethesda, MD, USA., Clark K; National Center for Biotechnology Information, National Library of Medicine, NIH, Bethesda, MD, USA., Martin F; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, UK., Howe K; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, UK., Flicek P; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, UK., Walenz BP; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Kwak W; eGnome, Inc., Seoul, Republic of Korea.; Hoonygen, Seoul, Korea., Clawson H; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA., Diekhans M; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA., Nassar L; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA., Paten B; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA., Kraus RHS; Department of Biology, University of Konstanz, Konstanz, Germany.; Department of Migration, Max Planck Institute of Animal Behavior, Radolfzell, Germany., Crawford AJ; Department of Biological Sciences, Universidad de los Andes, Bogotá, Colombia., Gilbert MTP; Center for Evolutionary Hologenomics, The GLOBE Institute, University of Copenhagen, Copenhagen, Denmark.; University Museum, NTNU, Trondheim, Norway., Zhang G; China National Genebank, BGI-Shenzhen, Shenzhen, China.; Villum Center for Biodiversity Genomics, Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark.; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.; Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, China., Venkatesh B; Institute of Molecular and Cell Biology, A*STAR, Biopolis, Singapore, Singapore., Murphy RW; Centre for Biodiversity, Royal Ontario Museum, Toronto, Ontario, Canada., Koepfli KP; Smithsonian Conservation Biology Institute, Center for Species Survival, National Zoological Park, Washington, DC, USA., Shapiro B; Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA, USA.; Howard Hughes Medical Institute, Chevy Chase, MD, USA., Johnson WE; Smithsonian Conservation Biology Institute, Center for Species Survival, National Zoological Park, Washington, DC, USA.; The Walter Reed Biosystematics Unit, Museum Support Center MRC-534, Smithsonian Institution, Suitland, MD, USA.; Walter Reed Army Institute of Research, Silver Spring, MD, USA., Di Palma F; Department of Biological Sciences, Earlham Institute, University of East Anglia, Norwich, UK., Marques-Bonet T; Institute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain.; Catalan Institution of Research and Advanced Studies (ICREA), Barcelona, Spain.; Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Barcelona, Spain., Teeling EC; School of Biology and Environmental Science, University College Dublin, Dublin, Ireland., Warnow T; Department of Computer Science, The University of Illinois at Urbana-Champaign, Urbana, IL, USA., Graves JM; School of Life Science, La Trobe University, Melbourne, Victoria, Australia., Ryder OA; San Diego Zoo Global, Escondido, CA, USA.; Department of Evolution, Behavior, and Ecology, University of California San Diego, La Jolla, CA, USA., Haussler D; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA.; Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA, USA., O'Brien SJ; Laboratory of Genomics Diversity-Center for Computer Technologies, ITMO University, St. Petersburg, Russian Federation.; Guy Harvey Oceanographic Center, Halmos College of Natural Sciences and Oceanography, Nova Southeastern University, Fort Lauderdale, FL, USA., Korlach J; Pacific Biosciences, Menlo Park, CA, USA., Lewin HA; The Genome Center, University of California Davis, Davis, CA, USA.; Department of Evolution and Ecology, University of California Davis, Davis, CA, USA.; John Muir Institute for the Environment, University of California Davis, Davis, CA, USA., Howe K; Wellcome Sanger Institute, Cambridge, UK. kj2@sanger.ac.uk., Myers EW; Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany. gene@mpi-cbg.de.; Center for Systems Biology, Dresden, Germany. gene@mpi-cbg.de.; Faculty of Computer Science, Technical University Dresden, Dresden, Germany. gene@mpi-cbg.de., Durbin R; Department of Genetics, University of Cambridge, Cambridge, UK. rd109@cam.ac.uk.; Wellcome Sanger Institute, Cambridge, UK. rd109@cam.ac.uk., Phillippy AM; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA. adam.phillippy@nih.gov., Jarvis ED; Vertebrate Genome Lab, The Rockefeller University, New York, NY, USA. ejarvis@rockefeller.edu.; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA. ejarvis@rockefeller.edu.; Howard Hughes Medical Institute, Chevy Chase, MD, USA. ejarvis@rockefeller.edu.
Publikováno v:
Nature [Nature] 2021 Apr; Vol. 592 (7856), pp. 737-746. Date of Electronic Publication: 2021 Apr 28.
Autor:
Mitros T; Department of Molecular and Cell Biology, University of California, Berkeley, CA, 94720, USA.; DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI), University of Illinois, Urbana-Champaign, IL, 61801, USA., Session AM; Department of Molecular and Cell Biology, University of California, Berkeley, CA, 94720, USA.; U.S. Department of Energy Joint Genome Institute, Berkeley, CA, 94720, USA., James BT; DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI), University of Illinois, Urbana-Champaign, IL, 61801, USA.; HudsonAlpha Biotechnology Institute, 601 Genome Way Northwest, Huntsville, AL, 35806, USA., Wu GA; U.S. Department of Energy Joint Genome Institute, Berkeley, CA, 94720, USA., Belaffif MB; DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI), University of Illinois, Urbana-Champaign, IL, 61801, USA.; HudsonAlpha Biotechnology Institute, 601 Genome Way Northwest, Huntsville, AL, 35806, USA., Clark LV; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.; High Performance Biological Computing, Roy J. Carver Biotechnology Center, University of Illinois, 206 West Gregory Drive, Urbana, IL, 61801, USA., Shu S; U.S. Department of Energy Joint Genome Institute, Berkeley, CA, 94720, USA., Dong H; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA., Barling A; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA., Holmes JR; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.; High Performance Biological Computing, Roy J. Carver Biotechnology Center, University of Illinois, 206 West Gregory Drive, Urbana, IL, 61801, USA., Mattick JE; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.; Department of Microbiology and Immunology, Stritch School of Medicine, Loyola University Chicago, Maywood, IL, 60153, USA., Bredeson JV; Department of Molecular and Cell Biology, University of California, Berkeley, CA, 94720, USA., Liu S; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.; Department of Genetics, Curriculum of Bioinformatics and Computational Biology, University of North Carolina, Chapel Hill, NC, 27514, USA., Farrar K; Institute of Biological, Environmental AND Rural Sciences (IBERS), Aberystwyth University, Gogerddan, Aberystwyth, Ceredigion, SY23 3EE, UK., Głowacka K; Institute of Plant Genetics, Polish Academy of Sciences, 60-479, Poznań, Poland.; Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA., Jeżowski S; Institute of Plant Genetics, Polish Academy of Sciences, 60-479, Poznań, Poland., Barry K; U.S. Department of Energy Joint Genome Institute, Berkeley, CA, 94720, USA., Chae WB; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.; Department of Environmental Horticulture, Dankook University, Cheonan, 31116, Republic of Korea., Juvik JA; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA., Gifford J; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA., Oladeinde A; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA., Yamada T; Field Science Center for Northern Biosphere, 10-chōme-3 Kita 11 Jōnishi, Kita-ku, Sapporo, Hokkaido, 060-0811, Japan., Grimwood J; U.S. Department of Energy Joint Genome Institute, Berkeley, CA, 94720, USA.; HudsonAlpha Biotechnology Institute, 601 Genome Way Northwest, Huntsville, AL, 35806, USA., Putnam NH; Dovetail Genomics, 100 Enterprise Way, Scotts Valley, CA, 95066, USA., De Vega J; Earlham Institute, Norwich Research Park Innovation Centre, Norwich, NR4 7UZ, UK., Barth S; Teagasc, Crops, Environment and Land Use Programme, Oak Park Research Centre, Carlow, R93XE12, Ireland., Klaas M; Teagasc, Crops, Environment and Land Use Programme, Oak Park Research Centre, Carlow, R93XE12, Ireland., Hodkinson T; Botany, School of Natural Sciences, Trinity College Dublin, The University of Dublin, D2, Dublin, Ireland., Li L; Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, 300 Fenglin Rd, Shanghai, 200032, China., Jin X; Department of Agronomy, Zhejiang University, Hangzhou, 310058, China., Peng J; HuaZhi Rice Biotech Company, Changsha, 410125, Hunan, China., Yu CY; Department of Applied Plant Sciences, Kangwon National University, Chuncheon, Gangwon, 200-701, Republic of Korea., Heo K; Department of Applied Plant Sciences, Kangwon National University, Chuncheon, Gangwon, 200-701, Republic of Korea., Yoo JH; Department of Applied Plant Sciences, Kangwon National University, Chuncheon, Gangwon, 200-701, Republic of Korea., Ghimire BK; Department of Applied Bioscience, Konkuk University, Seoul, 05029, Republic of Korea., Donnison IS; Institute of Biological, Environmental AND Rural Sciences (IBERS), Aberystwyth University, Gogerddan, Aberystwyth, Ceredigion, SY23 3EE, UK., Schmutz J; U.S. Department of Energy Joint Genome Institute, Berkeley, CA, 94720, USA.; HudsonAlpha Biotechnology Institute, 601 Genome Way Northwest, Huntsville, AL, 35806, USA., Hudson ME; DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI), University of Illinois, Urbana-Champaign, IL, 61801, USA.; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois, 1206 West Gregory Drive, Urbana, IL, 61801, USA., Sacks EJ; DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI), University of Illinois, Urbana-Champaign, IL, 61801, USA.; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois, 1206 West Gregory Drive, Urbana, IL, 61801, USA., Moose SP; DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI), University of Illinois, Urbana-Champaign, IL, 61801, USA.; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois, 1206 West Gregory Drive, Urbana, IL, 61801, USA., Swaminathan K; DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI), University of Illinois, Urbana-Champaign, IL, 61801, USA. kswaminathan@hudsonalpha.org.; HudsonAlpha Biotechnology Institute, 601 Genome Way Northwest, Huntsville, AL, 35806, USA. kswaminathan@hudsonalpha.org., Rokhsar DS; Department of Molecular and Cell Biology, University of California, Berkeley, CA, 94720, USA. dsrokhsar@gmail.com.; DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI), University of Illinois, Urbana-Champaign, IL, 61801, USA. dsrokhsar@gmail.com.; U.S. Department of Energy Joint Genome Institute, Berkeley, CA, 94720, USA. dsrokhsar@gmail.com.; Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 9040495, Japan. dsrokhsar@gmail.com.; Chan-Zuckerberg BioHub, 499 Illinois St, San Francisco, CA, 94158, USA. dsrokhsar@gmail.com.
Publikováno v:
Nature communications [Nat Commun] 2020 Oct 28; Vol. 11 (1), pp. 5442. Date of Electronic Publication: 2020 Oct 28.
Autor:
Simakov O; Molecular Genetics Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan. oleg.simakov@univie.ac.at.; Department of Neuroscience and Developmental Biology, University of Vienna, Vienna, Austria. oleg.simakov@univie.ac.at., Marlétaz F; Molecular Genetics Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan.; Centre for Life's Origins and Evolution, Department of Genetics, Evolution and Environment, University College London, London, UK., Yue JX; Université Côte d'Azur, CNRS, INSERM, IRCAN, Nice, France.; State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangzhou, China., O'Connell B; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA., Jenkins J; HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Brandt A; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA., Calef R; Dovetail Genomics, Scotts Valley, CA, USA., Tung CH; Institute of Cellular and Organismic Biology, Academia Sinica, Taipei, Taiwan., Huang TK; Institute of Cellular and Organismic Biology, Academia Sinica, Taipei, Taiwan., Schmutz J; HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Satoh N; Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan., Yu JK; Institute of Cellular and Organismic Biology, Academia Sinica, Taipei, Taiwan., Putnam NH; Dovetail Genomics, Scotts Valley, CA, USA., Green RE; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA., Rokhsar DS; Molecular Genetics Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan. dsrokhsar@gmail.com.; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA. dsrokhsar@gmail.com.; Chan Zuckerberg Biohub, San Francisco, CA, USA. dsrokhsar@gmail.com.
Publikováno v:
Nature ecology & evolution [Nat Ecol Evol] 2020 Jun; Vol. 4 (6), pp. 820-830. Date of Electronic Publication: 2020 Apr 20.
Autor:
Troll CJ; Division of Research and Development, Dovetail Genomics, LLC, Santa Cruz, California., Putnam NH; Division of Research and Development, Dovetail Genomics, LLC, Santa Cruz, California., Hartley PD; Division of Research and Development, Dovetail Genomics, LLC, Santa Cruz, California., Rice B; Division of Research and Development, Dovetail Genomics, LLC, Santa Cruz, California., Blanchette M; Division of Research and Development, Dovetail Genomics, LLC, Santa Cruz, California., Siddiqui S; Division of Research and Development, Dovetail Genomics, LLC, Santa Cruz, California., Ganbat JO; Division of Research and Development, Dovetail Genomics, LLC, Santa Cruz, California., Powers MP; Division of Research and Development, Dovetail Genomics, LLC, Santa Cruz, California., Ramakrishnan R; Division of Research and Development, Dovetail Genomics, LLC, Santa Cruz, California., Kunder CA; Department of Pathology, Stanford University School of Medicine, Stanford, California., Bustamante CD; Department of Biomedical Data Science, Stanford University School of Medicine, Stanford, California; Department of Genetics, Stanford University School of Medicine, Stanford, California., Zehnder JL; Department of Pathology, Stanford University School of Medicine, Stanford, California., Green RE; Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, California. Electronic address: ed@soe.ucsc.edu., Costa HA; Department of Pathology, Stanford University School of Medicine, Stanford, California; Department of Biomedical Data Science, Stanford University School of Medicine, Stanford, California. Electronic address: hcosta@stanford.edu.
Publikováno v:
The Journal of molecular diagnostics : JMD [J Mol Diagn] 2019 May; Vol. 21 (3), pp. 375-383. Date of Electronic Publication: 2018 Dec 31.
Autor:
Yue JX; Biosciences at Rice, Rice University, Houston, Texas Present address: Institute for Research on Cancer and Aging, Nice (IRCAN), CNRS UMR 7284, INSERM U1081, Nice 06107 France., Kozmikova I; Department of Transcriptional Regulation, Institute of Molecular Genetics, Prague 14220, Czech Republic., Ono H; Marine Biology Research Division, Scripps Institution of Oceanography, UC San Diego, La Jolla, California., Nossa CW; Biosciences at Rice, Rice University, Houston, Texas Present address: Gene by Gene Ltd., Houston, TX 77008., Kozmik Z; Department of Transcriptional Regulation, Institute of Molecular Genetics, Prague 14220, Czech Republic., Putnam NH; Biosciences at Rice, Rice University, Houston, Texas Present address: Dovetail Genomics, Santa Cruz, CA 95060., Yu JK; Institute of Cellular and Organismic Biology, Academia Sinica, Taipei, Taiwan., Holland LZ; Marine Biology Research Division, Scripps Institution of Oceanography, UC San Diego, La Jolla, California lzholland@ucsd.edu.
Publikováno v:
Genome biology and evolution [Genome Biol Evol] 2016 Aug 25; Vol. 8 (8), pp. 2387-405. Date of Electronic Publication: 2016 Aug 25.
Autor:
Long KA; Whitney Laboratory for Marine Bioscience, University of Florida, 9505 Ocean Shore Blvd., St Augustine, FL 32080 USA., Nossa CW; Department of Ecology and Evolutionary Biology, Rice University, P.O. Box 1892, Houston, TX 77251-1892 USA., Sewell MA; School of Biological Sciences, University of Auckland, Auckland, New Zealand., Putnam NH; Department of Ecology and Evolutionary Biology, Rice University, P.O. Box 1892, Houston, TX 77251-1892 USA., Ryan JF; Whitney Laboratory for Marine Bioscience, University of Florida, 9505 Ocean Shore Blvd., St Augustine, FL 32080 USA ; Department of Biology, University of Florida, Gainesville, FL 32611-8525 USA.
Publikováno v:
GigaScience [Gigascience] 2016 May 10; Vol. 5, pp. 20. Date of Electronic Publication: 2016 May 10 (Print Publication: 2016).
Autor:
Putnam NH; Dovetail Genomics LLC, Santa Cruz, California 95060, USA;, O'Connell BL; Dovetail Genomics LLC, Santa Cruz, California 95060, USA; Department of Biomolecular Engineering, University of California, Santa Cruz, California 95066, USA;, Stites JC; Dovetail Genomics LLC, Santa Cruz, California 95060, USA;, Rice BJ; Dovetail Genomics LLC, Santa Cruz, California 95060, USA;, Blanchette M; Dovetail Genomics LLC, Santa Cruz, California 95060, USA;, Calef R; Dovetail Genomics LLC, Santa Cruz, California 95060, USA;, Troll CJ; Dovetail Genomics LLC, Santa Cruz, California 95060, USA;, Fields A; Dovetail Genomics LLC, Santa Cruz, California 95060, USA;, Hartley PD; Dovetail Genomics LLC, Santa Cruz, California 95060, USA;, Sugnet CW; Dovetail Genomics LLC, Santa Cruz, California 95060, USA;, Haussler D; Department of Biomolecular Engineering, University of California, Santa Cruz, California 95066, USA; UC Santa Cruz Genomics Institute and Howard Hughes Medical Institute, University of California, Santa Cruz, California 95066, USA;, Rokhsar DS; Department of Molecular and Cell Biology, University of California, Berkeley, California 94720, USA; Department of Energy, Joint Genome Institute, Walnut Creek, California 94598, USA., Green RE; Dovetail Genomics LLC, Santa Cruz, California 95060, USA; Department of Biomolecular Engineering, University of California, Santa Cruz, California 95066, USA;
Publikováno v:
Genome research [Genome Res] 2016 Mar; Vol. 26 (3), pp. 342-50. Date of Electronic Publication: 2016 Feb 04.
Autor:
Zwarycz AS; Whitney Laboratory for Marine Bioscience, University of Florida Viterbo University., Nossa CW; Department of Ecology and Evolutionary Biology, Rice University., Putnam NH; Department of Ecology and Evolutionary Biology, Rice University., Ryan JF; Whitney Laboratory for Marine Bioscience, University of Florida Department of Biology, University of Florida joseph.ryan@whitney.ufl.edu.
Publikováno v:
Genome biology and evolution [Genome Biol Evol] 2015 Dec 10; Vol. 8 (1), pp. 271-81. Date of Electronic Publication: 2015 Dec 10.
Autor:
Simakov O; Molecular Genetics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495, Japan.; Department of Molecular Evolution, Centre for Organismal Studies, University of Heidelberg, 69115 Heidelberg, Germany., Kawashima T; Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495, Japan., Marlétaz F; Department of Zoology, University of Oxford, Oxford OX1 3PS, UK., Jenkins J; HudsonAlpha Institute of Biotechnology, Huntsville, Alabama 35806, USA., Koyanagi R; DNA Sequencing Section, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495, Japan., Mitros T; Department of Molecular and Cell Biology, University of California, Berkeley California 94720-3200, USA., Hisata K; Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495, Japan., Bredeson J; Department of Molecular and Cell Biology, University of California, Berkeley California 94720-3200, USA., Shoguchi E; Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495, Japan., Gyoja F; Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495, Japan., Yue JX; Department of Ecology and Evolutionary Biology, Rice University, Houston, Texas 77005, USA., Chen YC; Institute of Cellular and Organismic Biology, Academia Sinica, Taipei 11529, Taiwan., Freeman RM Jr; Department of Systems Biology, Harvard Medical School, Boston, Massachusetts 02115, USA., Sasaki A; Marine Biological Laboratory, Graduate School of Science, Hiroshima University, Onomichi, Hiroshima 722-0073, Japan., Hikosaka-Katayama T; Natural Science Center for Basic Research and Development, Gene Science Division, Hiroshima University, Higashi-Hiroshima, Hiroshima 739-8527, Japan., Sato A; Marine Biological Association of the UK, The Laboratory, Citadel Hill, Plymouth PL1 2PB, UK., Fujie M; DNA Sequencing Section, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495, Japan., Baughman KW; Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495, Japan., Levine J; Department of Biology, Hopkins Marine Station, Stanford University, Pacific Grove, California 93950, USA., Gonzalez P; Department of Biology, Hopkins Marine Station, Stanford University, Pacific Grove, California 93950, USA., Cameron C; Départment de sciences biologiques, University of Montreal, Quebec H3C 3J7, Canada., Fritzenwanker JH; Department of Biology, Hopkins Marine Station, Stanford University, Pacific Grove, California 93950, USA., Pani AM; University of North Caroline at Chapel Hill, North Carolina 27599, USA., Goto H; DNA Sequencing Section, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495, Japan., Kanda M; DNA Sequencing Section, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495, Japan., Arakaki N; DNA Sequencing Section, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495, Japan., Yamasaki S; DNA Sequencing Section, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495, Japan., Qu J; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, MS BCM226, Houston, Texas 77030, USA., Cree A; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, MS BCM226, Houston, Texas 77030, USA., Ding Y; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, MS BCM226, Houston, Texas 77030, USA., Dinh HH; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, MS BCM226, Houston, Texas 77030, USA., Dugan S; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, MS BCM226, Houston, Texas 77030, USA., Holder M; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, MS BCM226, Houston, Texas 77030, USA., Jhangiani SN; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, MS BCM226, Houston, Texas 77030, USA., Kovar CL; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, MS BCM226, Houston, Texas 77030, USA., Lee SL; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, MS BCM226, Houston, Texas 77030, USA., Lewis LR; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, MS BCM226, Houston, Texas 77030, USA., Morton D; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, MS BCM226, Houston, Texas 77030, USA., Nazareth LV; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, MS BCM226, Houston, Texas 77030, USA., Okwuonu G; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, MS BCM226, Houston, Texas 77030, USA., Santibanez J; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, MS BCM226, Houston, Texas 77030, USA., Chen R; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, MS BCM226, Houston, Texas 77030, USA., Richards S; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, MS BCM226, Houston, Texas 77030, USA., Muzny DM; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, MS BCM226, Houston, Texas 77030, USA., Gillis A; Department of Zoology, University of Cambridge, Cambridge CB2 3EJ, UK., Peshkin L; Department of Systems Biology, Harvard Medical School, Boston, Massachusetts 02115, USA., Wu M; Department of Molecular and Cell Biology, University of California, Berkeley California 94720-3200, USA., Humphreys T; Institute for Biogenesis Research, University of Hawaii, Hawaii 96822, USA., Su YH; Institute of Cellular and Organismic Biology, Academia Sinica, Taipei 11529, Taiwan., Putnam NH; Department of Ecology and Evolutionary Biology, Rice University, Houston, Texas 77005, USA., Schmutz J; HudsonAlpha Institute of Biotechnology, Huntsville, Alabama 35806, USA., Fujiyama A; National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan., Yu JK; Institute of Cellular and Organismic Biology, Academia Sinica, Taipei 11529, Taiwan., Tagawa K; Marine Biological Laboratory, Graduate School of Science, Hiroshima University, Onomichi, Hiroshima 722-0073, Japan., Worley KC; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, MS BCM226, Houston, Texas 77030, USA., Gibbs RA; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, MS BCM226, Houston, Texas 77030, USA., Kirschner MW; Department of Systems Biology, Harvard Medical School, Boston, Massachusetts 02115, USA., Lowe CJ; Department of Biology, Hopkins Marine Station, Stanford University, Pacific Grove, California 93950, USA., Satoh N; Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495, Japan., Rokhsar DS; Molecular Genetics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495, Japan.; Department of Molecular and Cell Biology, University of California, Berkeley California 94720-3200, USA.; US Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA., Gerhart J; Department of Molecular and Cell Biology, University of California, Berkeley California 94720-3200, USA.
Publikováno v:
Nature [Nature] 2015 Nov 26; Vol. 527 (7579), pp. 459-65. Date of Electronic Publication: 2015 Nov 18.