Zobrazeno 1 - 10
of 235
pro vyhledávání: '"Proteomics Standards Initiative"'
Autor:
Eric W. Deutsch, Juan Antonio Vizcaíno, Andrew R. Jones, Pierre-Alain Binz, Henry Lam, Joshua Klein, Wout Bittremieux, Yasset Perez-Riverol, David L. Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D. Mak, Shin Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy Carver, Benjamin Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C. E. Tosatto, Sandra E. Orchard
Publikováno v:
Journal of proteome research
JOURNAL OF PROTEOME RESEARCH
JOURNAL OF PROTEOME RESEARCH
The Human Proteome Organization (HUPO) Proteomics Standards Initiative (PSI) has been successfully developing guidelines, data formats, and controlled vocabularies (CVs) for the proteomics community and other fields supported by mass spectrometry sin
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0c134d30524765e956ad3db0844e8b11
https://hdl.handle.net/10067/1935320151162165141
https://hdl.handle.net/10067/1935320151162165141
Publikováno v:
Bhamber, R S, Jankevics, A, Deutsch, E W, Jones, A R & Dowsey, A 2020, ' mzMLb : a future-proof raw mass spectrometry data format based on standards-compliant mzML and optimized for speed and storage requirements ', Journal of Proteome Research . https://doi.org/10.1101/2020.02.13.947218, https://doi.org/10.1021/acs.jproteome.0c00192
Journal of Proteome Research
JOURNAL OF PROTEOME RESEARCH
Journal of Proteome Research
JOURNAL OF PROTEOME RESEARCH
With ever-increasing amounts of data produced by mass spectrometry (MS) proteomics and metabolomics, and the sheer volume of samples now analyzed, the need for a common open format possessing both file size efficiency and faster read/write speeds has
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7d1329b504e05aad21fa3502e74695cf
https://doi.org/10.1021/acs.jproteome.0c00192
https://doi.org/10.1021/acs.jproteome.0c00192
Autor:
Sylvie Ricard-Blum, Madeline Deniaud, Alain Rivet, Serge Pérez, Olivier Clerc, Sylvain D. Vallet, Alexandra Naba, Nicolas Thierry-Mieg
Publikováno v:
Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2019, 47 (D1), pp.D376-D381. ⟨10.1093/nar/gky1035⟩
Nucleic Acids Research, Oxford University Press, 2019, 47 (D1), pp.D376-D381. ⟨10.1093/nar/gky1035⟩
International audience; MatrixDB (http://matrixdb.univ-lyon1.fr/) is an interaction database focused on biomolecular interactions established by extracellular matrix (ECM) proteins and glycosaminoglycans (GAGs). It is an active member of the Internat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::75404a542ab7cdb8da1685a82cca1f29
Autor:
Nuno Bandeira, Yves Vandenbrouck, Fernando J. Corrales, Robert L. Moritz, Eric W. Deutsch, Christopher M. Overall, Charles Pineau, Jennifer E. Van Eyk, Gilbert S. Omenn, Mark S. Baker, Susan T. Weintraub, Sandra Orchard, Lydie Lane, Young Ki Paik
Publikováno v:
Journal of Proteome Research
Journal of Proteome Research, 2019, 18 (12), pp.4108-4116. ⟨10.1021/acs.jproteome.9b00542⟩
Journal of Proteome Research, American Chemical Society, 2019, 18 (12), pp.4108-4116. ⟨10.1021/acs.jproteome.9b00542⟩
Journal of Proteome Research, Vol. 18, No 12 (2019) pp. 4108-4116
Journal of Proteome Research, 2019, 18 (12), pp.4108-4116. ⟨10.1021/acs.jproteome.9b00542⟩
Journal of Proteome Research, American Chemical Society, 2019, 18 (12), pp.4108-4116. ⟨10.1021/acs.jproteome.9b00542⟩
Journal of Proteome Research, Vol. 18, No 12 (2019) pp. 4108-4116
The Human Proteome Organization’s (HUPO) Human Proteome Project (HPP) developed Mass Spectrometry (MS) Data Interpretation Guidelines that have been applied since 2016. These guidelines have helped ensure that the emerging draft of the complete hum
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ae7f650039bde3f5010c2c07746704d0
https://doi.org/10.1021/acs.jproteome.9b00542
https://doi.org/10.1021/acs.jproteome.9b00542
Publikováno v:
Analytical Chemistry. 91:12615-12618
mzTab 2.0 for metabolomics (mzTab-M) is the most recent standard format developed in collaboration by the Proteomics and Metabolomics Standards Initiatives including contributions by the recently founded Lipidomics Standards Initiative. mzTab-M is a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c3f1f2561e98dabe5c4fc416feafa77a
https://doi.org/10.1021/acs.analchem.9b01987
https://doi.org/10.1021/acs.analchem.9b01987
Publikováno v:
Molecular & Cellular Proteomics. 18:S193-S201
Here we present IPSA, an innovative web-based spectrum annotator that visualizes and characterizes peptide tandem mass spectra. A tool for the scientific community, IPSA can visualize peptides collected using a wide variety of experimental and instru
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f05f8ceb2e80b2f0a2501e259644b9ba
https://doi.org/10.1074/mcp.tir118.001209
https://doi.org/10.1074/mcp.tir118.001209
Autor:
Jingwen Deng, Anja Füllgrabe, Tim Van Den Bossche, Vinay Kumar Duggineni, Patroklos Samaras, Oliver Kohlbacher, Chengxin Dai, Lev I. Levitsky, Björn Grüning, Enrique Audain, Mingze Bai, Marie Locard-Paulet, Nancy George, Julian Uszkoreit, Meena Choi, Irene Papatheodorou, Mingxun Wang, Henry Webel, Michael Turewicz, Johannes Griss, Stefan Schulze, Yasset Perez-Riverol, Eric W. Deutsch, Deepti J. Kundu, Timo Sachsenberg, Veit Schwämmle, Marc Vaudel, Selvakumar Kamatchinathan, Martin Eisenacher, Silvie Fexova, Alvis Brazma, Savita Jayaram, David Bouyssié, Nuno Bandeira, Mathias Wilhelm, Julianus Pfeuffer, Melanie Christine Föll, Elizaveta M. Solovyeva, Juan Antonio Vizcaíno, Pablo Moreno
The amount of public proteomics data is increasing at an extraordinary rate. Hundreds of datasets are submitted each month to ProteomeXchange repositories, representing many types of proteomics studies, focusing on different aspects such as quantitat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::9346113d61618a1af97a89012094d24f
https://doi.org/10.1101/2021.05.21.445143
https://doi.org/10.1101/2021.05.21.445143
Autor:
Tim Van Den Bossche, Wout Bittremieux, Marie Locard-Paulet, Julian Uszkoreit, Veit Schwämmle, Viktoria Dorfer, Yasset Perez-Riverol, David Bouyssié
Publikováno v:
Rapid communications in mass spectrometry
RAPID COMMUNICATIONS IN MASS SPECTROMETRY
RAPID COMMUNICATIONS IN MASS SPECTROMETRY
The European Bioinformatics Community for Mass Spectrometry (EuBIC‐MS; eubic-ms.org) was founded in 2014 to unite European computational mass spectrometry researchers and proteomics bioinformaticians working in academia and industry. EuBIC‐MS mai
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::02b442d59e2ecb244241e8e65f48b743
https://repository.uantwerpen.be/docstore/d:irua:5760
https://repository.uantwerpen.be/docstore/d:irua:5760
Autor:
Luana Licata, Livia Perfetto, Negin Rahimzadeh, Marta Iannuccelli, Igor Jurisica, Sandra Orchard, Chiara Pastrello, Margaret Duesbury, Lukasz Salwinski, Pablo Porras, Noemi del-Toro, Max Kotlyar, Anjali Shrivastava, Sylvie Ricard-Blum, Matteo Pellegrini, Henning Hermjakob, Simona Panni, Gianni Cesareni, Birgit H M Meldal, Kalpana Panneerselvam
Publikováno v:
bioRxiv
article-version (status) pre
article-version (number) 1
Database
Database: The Journal of Biological Databases and Curation
article-version (status) pre
article-version (number) 1
Database
Database: The Journal of Biological Databases and Curation
The current Coronavirus Disease 2019 (COVID-19) pandemic, caused by the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), has spurred a wave of research of nearly unprecedented scale. Among the different strategies that are being used to
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::92899db13e392358630217d6ee0725bc
http://europepmc.org/articles/PMC7310617
http://europepmc.org/articles/PMC7310617
Autor:
Steffen Neumann, Rene Meier, Mingxun Wang, Simon Rogers, Pieter C. Dorrestein, Tobias Schulze, Emma L. Schymanski, Christopher Chen, Wout Bittremieux
The growth of online mass spectrometry metabolomics resources, including data repositories, spectral library databases, and online analysis platforms has created an environment of online/web accessibility. Here, we introduce the Metabolomics Spectrum
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::786c65f0a14b00fc7507b8488b344cfd
https://doi.org/10.1101/2020.05.09.086066
https://doi.org/10.1101/2020.05.09.086066