Výsledky vyhledávání - "Protein residue"

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Multiscale Graph Neural Networks for Protein Residue Contact Map Prediction

Autor: Liu, Kuang, Kalia, Rajiv K., Liu, Xinlian, Nakano, Aiichiro, Nomura, Ken-ichi, Vashishta, Priya, Zamora-Resendizc, Rafael

Machine learning (ML) is revolutionizing protein structural analysis, including an important subproblem of predicting protein residue contact maps, i.e., which amino-acid residues are in close spatial proximity given the amino-acid sequence of a prot

Externí odkaz: http://arxiv.org/abs/2212.02251

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Akademický článek

Dissecting diazirine photo-reaction mechanism for protein residue-specific cross-linking and distance mapping

Autor: Yida Jiang, Xinghe Zhang, Honggang Nie, Jianxiong Fan, Shuangshuang Di, Hui Fu, Xiu Zhang, Lijuan Wang, Chun Tang

Publikováno v: Nature Communications, Vol 15, Iss 1, Pp 1-10 (2024)

Abstract While photo-cross-linking (PXL) with alkyl diazirines can provide stringent distance restraints and offer insights into protein structures, unambiguous identification of cross-linked residues hinders data interpretation to the same level tha

Externí odkaz: https://doaj.org/article/cf088e26e48a4202afa5720cbbf10b82

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Akademický článek

The mutation of Japanese encephalitis virus envelope protein residue 389 attenuates viral neuroinvasiveness

Autor: Rong Huang, Yajing He, Chenghua Zhang, Yue Luo, Chen Chen, Ning Tan, Yang Ren, Kui Xu, Lei Yuan, Jian Yang

Publikováno v: Virology Journal, Vol 21, Iss 1, Pp 1-12 (2024)

Abstract The envelope (E) protein of the Japanese encephalitis virus (JEV) is a key protein for virus infection and adsorption of host cells, which determines the virulence of the virus and regulates the intensity of inflammatory response. The mutati

Externí odkaz: https://doaj.org/article/67c6875abe814ab0ba44cc6454f93a7a

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Akademický článek

A benzo[b]thiophene-derived inhibitor of virus particle assembly via targeting capsid protein residue Arg157.

Autor: Shi S; State Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for R&D of Fine Chemicals of Guizhou University, Guiyang 550025, China., Liu D; College of Plant Protection, Shandong Agricultural University, NO.61 Daizong Street, Tai'an City, Shandong province 271018, China., Wei C; State Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for R&D of Fine Chemicals of Guizhou University, Guiyang 550025, China., Li J; State Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for R&D of Fine Chemicals of Guizhou University, Guiyang 550025, China., Zhao C; State Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for R&D of Fine Chemicals of Guizhou University, Guiyang 550025, China., Tian Y; College of Plant Protection, Shandong Agricultural University, NO.61 Daizong Street, Tai'an City, Shandong province 271018, China. Electronic address: Yanping.tian@sdau.edu.cn., Li X; College of Plant Protection, Shandong Agricultural University, NO.61 Daizong Street, Tai'an City, Shandong province 271018, China., Song R; State Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for R&D of Fine Chemicals of Guizhou University, Guiyang 550025, China., Song B; State Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for R&D of Fine Chemicals of Guizhou University, Guiyang 550025, China. Electronic address: songbaoan22@yahoo.com.

Publikováno v: International journal of biological macromolecules [Int J Biol Macromol] 2024 Dec 08; Vol. 287, pp. 138467. Date of Electronic Publication: 2024 Dec 08.

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