Litter Commensal Bacteria Can Limit the Horizontal Gene Transfer of Antimicrobial Resistance to Salmonella in Chickens.

Autor: Oladeinde A; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Abdo Z; Department of Microbiology, Immunology and Pathology, Colorado State Universitygrid.47894.36, Fort Collins, Colorado, USA., Zwirzitz B; Institute of Food Science, University of Natural Resources and Life Sciences, Vienna, Austria., Woyda R; Department of Microbiology, Immunology and Pathology, Colorado State Universitygrid.47894.36, Fort Collins, Colorado, USA., Lakin SM; Department of Microbiology, Immunology and Pathology, Colorado State Universitygrid.47894.36, Fort Collins, Colorado, USA., Press MO; Phase Genomics, Inc., Seattle, Washington, USA., Cox NA; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Thomas JC 4th; Division of STD Prevention, National Center for HIV/AIDS, Viral Hepatitis, STD and TB Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA., Looft T; National Animal Disease Center, USDA-ARS, Ames, Iowa, USA., Rothrock MJ Jr; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Zock G; Department of Poultry Science, University of Georgia, Athens, Georgia, USA., Plumblee Lawrence J; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Cudnik D; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Ritz C; Department of Poultry Science, University of Georgia, Athens, Georgia, USA., Aggrey SE; Department of Poultry Science, University of Georgia, Athens, Georgia, USA., Liachko I; Phase Genomics, Inc., Seattle, Washington, USA., Grove JR; Phase Genomics, Inc., Seattle, Washington, USA., Wiersma C; Department of Microbiology, Immunology and Pathology, Colorado State Universitygrid.47894.36, Fort Collins, Colorado, USA.

Publikováno v: Applied and environmental microbiology [Appl Environ Microbiol] 2022 May 10; Vol. 88 (9), pp. e0251721. Date of Electronic Publication: 2022 Apr 13.

Erratum for Oladeinde et al., "Horizontal Gene Transfer Is the Main Driver of Antimicrobial Resistance in Broiler Chicks Infected with Salmonella enterica Serovar Heidelberg".

Autor: Oladeinde A; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Abdo Z; Department of Microbiology, Immunology and Pathology, Colorado State Universitygrid.47894.36, Fort Collins, Colorado, USA., Press MO; Phase Genomics Inc., Seattle, Washington, USA., Cook K; Office of National Programs, USDA-ARS, Beltsville, Maryland, USA., Cox NA; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Zwirzitz B; Institute of Food Safety, Food Technology and Veterinary Public Health, University of Veterinary Medicine, Vienna, Austria.; Austrian Competence Centre for Feed and Food Quality, Safety, and Innovation FFoQSI GmbH, Tulln, Austria., Woyda R; Department of Microbiology, Immunology and Pathology, Colorado State Universitygrid.47894.36, Fort Collins, Colorado, USA., Lakin SM; Department of Microbiology, Immunology and Pathology, Colorado State Universitygrid.47894.36, Fort Collins, Colorado, USA., Thomas JC 4th; Division of STD Prevention, National Center for HIV/AIDS, Viral Hepatitis, STD and TB Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA., Looft T; National Animal Disease Center, USDA-ARS, Ames, Iowa, USA., Cosby DE; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Hinton A Jr; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Guard J; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Line E; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Rothrock MJ; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Berrang ME; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Herrington K; Medical College of Georgia, Augusta, Georgia, USA., Zock G; Poultry Science Department, University of Georgia, Athens, Georgia, USA., Plumblee Lawrence J; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Cudnik D; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., House S; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Ingram K; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Lariscy L; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Wagner M; Institute of Food Safety, Food Technology and Veterinary Public Health, University of Veterinary Medicine, Vienna, Austria.; Austrian Competence Centre for Feed and Food Quality, Safety, and Innovation FFoQSI GmbH, Tulln, Austria., Aggrey SE; Poultry Science Department, University of Georgia, Athens, Georgia, USA., Chai L; Poultry Science Department, University of Georgia, Athens, Georgia, USA., Ritz C; Poultry Science Department, University of Georgia, Athens, Georgia, USA.

Publikováno v: MSystems [mSystems] 2021 Oct 26; Vol. 6 (5), pp. e0114721. Date of Electronic Publication: 2021 Sep 28.

Horizontal Gene Transfer Is the Main Driver of Antimicrobial Resistance in Broiler Chicks Infected with Salmonella enterica Serovar Heidelberg.

Autor: Oladeinde A; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Abdo Z; Department of Microbiology, Immunology and Pathology, Colorado State Universitygrid.47894.36, Fort Collins, Colorado, USA., Press MO; Phase Genomics Inc., Seattle, Washington, USA., Cook K; Office of National Programs, USDA-ARS, Beltsville, Maryland, USA., Cox NA; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Zwirzitz B; Institute of Food Safety, Food Technology and Veterinary Public Health, University of Veterinary Medicine, Vienna, Austria.; Austrian Competence Centre for Feed and Food Quality, Safety, and Innovation FFoQSI GmbH, Tulln, Austria., Woyda R; Department of Microbiology, Immunology and Pathology, Colorado State Universitygrid.47894.36, Fort Collins, Colorado, USA., Lakin SM; Department of Microbiology, Immunology and Pathology, Colorado State Universitygrid.47894.36, Fort Collins, Colorado, USA., Thomas JC 4th; Division of STD Prevention, National Center for HIV/AIDS, Viral Hepatitis, STD and TB Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA., Looft T; National Animal Disease Center, USDA-ARS, Ames, Iowa, USA., Cosby DE; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Hinton A Jr; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Guard J; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Line E; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Rothrock MJ; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Berrang ME; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Herrington K; Medical College of Georgia, Augusta, Georgia, USA., Zock G; Poultry Science Department, University of Georgia, Athens, Georgia, USA., Plumblee Lawrence J; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Cudnik D; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., House S; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Ingram K; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Lariscy L; U.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA., Wagner M; Institute of Food Safety, Food Technology and Veterinary Public Health, University of Veterinary Medicine, Vienna, Austria.; Austrian Competence Centre for Feed and Food Quality, Safety, and Innovation FFoQSI GmbH, Tulln, Austria., Aggrey SE; Poultry Science Department, University of Georgia, Athens, Georgia, USA., Chai L; Poultry Science Department, University of Georgia, Athens, Georgia, USA., Ritz C; Poultry Science Department, University of Georgia, Athens, Georgia, USA.

Publikováno v: MSystems [mSystems] 2021 Aug 31; Vol. 6 (4), pp. e0072921. Date of Electronic Publication: 2021 Aug 24.

High-Quality Assemblies for Three Invasive Social Wasps from the Vespula Genus.

Autor: Harrop TWR; Genomics Aotearoa and Department of Biochemistry, University of Otago, Dunedin 9054, Aotearoa, New Zealand., Guhlin J; Genomics Aotearoa and Department of Biochemistry, University of Otago, Dunedin 9054, Aotearoa, New Zealand., McLaughlin GM; Genomics Aotearoa and Department of Biochemistry, University of Otago, Dunedin 9054, Aotearoa, New Zealand., Permina E; Genomics Aotearoa and Department of Biochemistry, University of Otago, Dunedin 9054, Aotearoa, New Zealand., Stockwell P; Pathology Department, University of Otago, Dunedin, Aotearoa, New Zealand., Gilligan J; Genomics Aotearoa and Department of Biochemistry, University of Otago, Dunedin 9054, Aotearoa, New Zealand., Le Lec MF; Genomics Aotearoa and Department of Biochemistry, University of Otago, Dunedin 9054, Aotearoa, New Zealand., Gruber MAM; Centre for Biodiversity and Restoration Ecology, School of Biological Sciences, Victoria University of Wellington, PO Box 600, New Zealand., Quinn O; Centre for Biodiversity and Restoration Ecology, School of Biological Sciences, Victoria University of Wellington, PO Box 600, New Zealand., Lovegrove M; Genomics Aotearoa and Department of Biochemistry, University of Otago, Dunedin 9054, Aotearoa, New Zealand., Duncan EJ; School of Biology, Faculty of Biological Sciences, University of Leeds, LS2 9JT, United Kingdom., Remnant EJ; School of Life and Environmental Sciences, University of Sydney, NSW 2006, Australia., Van Eeckhoven J; School of Biology, Faculty of Biological Sciences, University of Leeds, LS2 9JT, United Kingdom., Graham B; School of Biology, Faculty of Biological Sciences, University of Leeds, LS2 9JT, United Kingdom., Knapp RA; School of Biology, Faculty of Biological Sciences, University of Leeds, LS2 9JT, United Kingdom., Langford KW; Phase Genomics Inc., 1617 8th Ave N, Seattle, WA 98109., Kronenberg Z; Phase Genomics Inc., 1617 8th Ave N, Seattle, WA 98109., Press MO; Phase Genomics Inc., 1617 8th Ave N, Seattle, WA 98109., Eacker SM; Phase Genomics Inc., 1617 8th Ave N, Seattle, WA 98109., Wilson-Rankin EE; Department of Entomology, University of California, Riverside, CA 92521., Purcell J; Department of Entomology, University of California, Riverside, CA 92521., Lester PJ; Centre for Biodiversity and Restoration Ecology, School of Biological Sciences, Victoria University of Wellington, PO Box 600, New Zealand., Dearden PK; Genomics Aotearoa and Department of Biochemistry, University of Otago, Dunedin 9054, Aotearoa, New Zealand peter.dearden@otago.ac.nz.

Publikováno v: G3 (Bethesda, Md.) [G3 (Bethesda)] 2020 Oct 05; Vol. 10 (10), pp. 3479-3488. Date of Electronic Publication: 2020 Oct 05.

Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation.

Autor: Bickhart DM; Cell Wall Biology and Utilization Laboratory, Dairy Forage Research Center, USDA, Madison, WI, 53706, USA., Watson M; Division of Genetics and Genomics, The Roslin Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, EH25 9RG, UK., Koren S; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, MD, USA., Panke-Buisse K; Cell Wall Biology and Utilization Laboratory, Dairy Forage Research Center, USDA, Madison, WI, 53706, USA., Cersosimo LM; Department of Animal Sciences, University of Florida, Gainesville, FL, 32611, USA., Press MO; Phase Genomics Inc, Seattle, WA, 98109, USA., Van Tassell CP; Animal Genomics and Improvement Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, USDA, Beltsville, MD, 20705, USA., Van Kessel JAS; Environmental Microbial and Food Safety Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, USDA, Beltsville, MD, 20705, USA., Haley BJ; Environmental Microbial and Food Safety Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, USDA, Beltsville, MD, 20705, USA., Kim SW; Environmental Microbial and Food Safety Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, USDA, Beltsville, MD, 20705, USA., Heiner C; Pacific Biosciences, Menlo Park, CA, USA., Suen G; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, 53706, USA., Bakshy K; Cell Wall Biology and Utilization Laboratory, Dairy Forage Research Center, USDA, Madison, WI, 53706, USA., Liachko I; Phase Genomics Inc, Seattle, WA, 98109, USA., Sullivan ST; Phase Genomics Inc, Seattle, WA, 98109, USA., Myer PR; Department of Animal Science, University of Tennessee, Knoxville, TN, 37996, USA., Ghurye J; Department of Computer Science, University of Maryland, College Park, MD, 20742, USA., Pop M; Department of Computer Science, University of Maryland, College Park, MD, 20742, USA., Weimer PJ; Cell Wall Biology and Utilization Laboratory, Dairy Forage Research Center, USDA, Madison, WI, 53706, USA.; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, 53706, USA., Phillippy AM; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, MD, USA., Smith TPL; USDA-ARS U.S. Meat Animal Research Center, Clay Center, NE, 68933, USA. tim.smith2@usda.gov.

Publikováno v: Genome biology [Genome Biol] 2019 Aug 02; Vol. 20 (1), pp. 153. Date of Electronic Publication: 2019 Aug 02.