Mitochondrial ATP generation is more proteome efficient than glycolysis.

Autor: Shen Y; Department of Chemistry, Princeton University, Princeton, NJ, USA.; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA., Dinh HV; Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, USA., Cruz ER; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.; Department of Molecular Biology, Princeton University, Princeton, NJ, USA., Chen Z; Department of Chemistry, Princeton University, Princeton, NJ, USA.; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.; Ludwig Institute for Cancer Research, Princeton Branch, Princeton, NJ, USA., Bartman CR; Department of Chemistry, Princeton University, Princeton, NJ, USA.; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.; Ludwig Institute for Cancer Research, Princeton Branch, Princeton, NJ, USA., Xiao T; Department of Chemistry, Princeton University, Princeton, NJ, USA.; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA., Call CM; Department of Chemistry, Princeton University, Princeton, NJ, USA.; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA., Ryseck RP; Department of Chemistry, Princeton University, Princeton, NJ, USA.; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA., Pratas J; Department of Chemistry, Princeton University, Princeton, NJ, USA.; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA., Weilandt D; Department of Chemistry, Princeton University, Princeton, NJ, USA.; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA., Baron H; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA., Subramanian A; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA., Fatma Z; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA.; Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA., Wu ZY; US Department of Energy Joint Genome Institute and Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Dwaraknath S; US Department of Energy Joint Genome Institute and Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Hendry JI; Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, USA., Tran VG; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA.; Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA., Yang L; Department of Chemistry, Princeton University, Princeton, NJ, USA.; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA., Yoshikuni Y; US Department of Energy Joint Genome Institute and Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Zhao H; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA.; Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA., Maranas CD; Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, USA., Wühr M; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA. wuhr@princeton.edu.; Department of Molecular Biology, Princeton University, Princeton, NJ, USA. wuhr@princeton.edu., Rabinowitz JD; Department of Chemistry, Princeton University, Princeton, NJ, USA. joshr@princeton.edu.; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA. joshr@princeton.edu.; Ludwig Institute for Cancer Research, Princeton Branch, Princeton, NJ, USA. joshr@princeton.edu.

Publikováno v: Nature chemical biology [Nat Chem Biol] 2024 Sep; Vol. 20 (9), pp. 1123-1132. Date of Electronic Publication: 2024 Mar 06.

Chapter 10 - Native trees on abandoned mine land: From environmental remediation to bioeconomy

Autor: Favas, P.J.C., Pratas, J., Chaturvedi, R., Paul, M.S., Prasad, Majeti Narasimha Vara

Publikováno v: In Bioremediation and Bioeconomy Edition: Second Edition. 2024:257-287

Amendment of soils with metal-rich sludge: Potential water toxicity due to metal release via over-time slaking.

Autor: Ojeda G; Escuela de Ciencias Agrícolas, Pecuarias y del Medio Ambiente - ECAPMA, Universidad Nacional Abierta y a Distancia - UNAD, Calle 14 sur # 14 - 31, Bogotá, DC, Colombia; CREAF, Cerdanyola del Vallès, 08193, Spain. Electronic address: franklin.ojeda@unad.edu.co., Moreira-Santos M; CFE-Centre for Functional Ecology - Science for People and the Planet, Associate Laboratory TERRA, University of Coimbra, Department of Life Sciences, Calçada Martim de Freitas, 3000-456, Coimbra, Portugal., Sousa JP; CFE-Centre for Functional Ecology - Science for People and the Planet, Associate Laboratory TERRA, University of Coimbra, Department of Life Sciences, Calçada Martim de Freitas, 3000-456, Coimbra, Portugal., Pratas J; Department of Earth Sciences, Faculty of Sciences and Technology, University of Coimbra, 3001 401, Coimbra, Portugal., Ribeiro R; CFE-Centre for Functional Ecology - Science for People and the Planet, Associate Laboratory TERRA, University of Coimbra, Department of Life Sciences, Calçada Martim de Freitas, 3000-456, Coimbra, Portugal., Costa M; DEQAL, Direção Regional de Agricultura e Pescas do Norte, Estrada Exterior da Circunvalação, 11846, 4460-281, Senhora da Hora, Portugal., Natal-da-Luz T; CFE-Centre for Functional Ecology - Science for People and the Planet, Associate Laboratory TERRA, University of Coimbra, Department of Life Sciences, Calçada Martim de Freitas, 3000-456, Coimbra, Portugal.

Publikováno v: Chemosphere [Chemosphere] 2023 Oct; Vol. 338, pp. 139482. Date of Electronic Publication: 2023 Jul 11.

Contributors

Autor: Amulya, K., Appenroth, Klaus J., Barbosa, B., Barros, Lucélia Alcantara, Chaturvedi, R., Chibrik, Tamara S., Costa, J., Dahiya, Shikha, Deyris, Pierre-Alexandre, Dubois, Patricia, Favas, P.J.C., Fernando, A.L., Filimonova, Elena I., Glazyrina, Margarita A., Gomes, L.A., Gopalakrishnan, S., Grison, Claude, Guimaraes, Marcus Leonan Costa, Guimarães, Taciana Guarnieri Soares, Jitto, Ponlakit, Kathi, Srujana, Kiran, Boda Ravi, Kumar, Adarsh, Kumar, Raman, Kutrasaeng, Nichanun, Labuto, Geórgia, Lemoine, Guillaume, Lukina, Natalia V., Maiti, Subodh Kumar, Maleva, Maria G., Mohan, S. Venkata, Nakbanpote, Woranan, Neha, Yograj, Olszewski, Tomasz K., Papazoglou, E.G., Pasumarthi, R., Paul, M.S., Poullain, Cyril, Prasad, Majeti Narasimha Vara, Pratas, J., Rao, P. Srinivasa, Ravishankar, G.A., Sahu, Sai Shankar, Sarma, Hemen, Schmidt-Przewoźna, K., Sebastian, Abin, Silva, Ricardo Santos, Sivasubramanian, V., Sowjanya Sree, K., Srivatsan, Vidyashankar, Sytar, Oksana, Taya, Uraiwan, Tewari, J.C., Warra, Aliyu Ahmad

Publikováno v: In Bioremediation and Bioeconomy Edition: Second Edition. 2024:xiii-xv

Comparative study of two Saccharomyces cerevisiae strains with kinetic models at genome-scale.

Autor: Hu M; Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA; DOE Center for Advanced Bioenergy and Bioproducts Innovation, USA., Dinh HV; Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA; DOE Center for Advanced Bioenergy and Bioproducts Innovation, USA., Shen Y; Department of Chemistry, Princeton University, Princeton, NJ, 08544, USA; Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, 08544, USA; DOE Center for Advanced Bioenergy and Bioproducts Innovation, USA., Suthers PF; Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA; DOE Center for Advanced Bioenergy and Bioproducts Innovation, USA., Foster CJ; Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA., Call CM; Department of Chemistry, Princeton University, Princeton, NJ, 08544, USA; Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, 08544, USA; DOE Center for Advanced Bioenergy and Bioproducts Innovation, USA., Ye X; Department of Molecular Biology, Princeton University, Princeton, NJ, 08544, USA., Pratas J; Department of Chemistry, Princeton University, Princeton, NJ, 08544, USA; Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, 08544, USA; DOE Center for Advanced Bioenergy and Bioproducts Innovation, USA., Fatma Z; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA; DOE Center for Advanced Bioenergy and Bioproducts Innovation, USA., Zhao H; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA; Department of Chemical and Biomolecular Engineering, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA; DOE Center for Advanced Bioenergy and Bioproducts Innovation, USA., Rabinowitz JD; Department of Chemistry, Princeton University, Princeton, NJ, 08544, USA; Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, 08544, USA; DOE Center for Advanced Bioenergy and Bioproducts Innovation, USA., Maranas CD; Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA; DOE Center for Advanced Bioenergy and Bioproducts Innovation, USA. Electronic address: costas@psu.edu.

Publikováno v: Metabolic engineering [Metab Eng] 2023 Mar; Vol. 76, pp. 1-17. Date of Electronic Publication: 2023 Jan 02.