Conserved Calcium-Binding Residues at the Ca‑I Site Involved in Fructooligosaccharide Synthesis by Lactobacillus reuteri 121 Inulosucrase

Autor: Thanapon Charoenwongpaiboon, Panachai Punnatin, Methus Klaewkla, Pratchaya Pramoj Na Ayutthaya, Karan Wangpaiboon, Surasak Chunsrivirot, Robert A. Field, Rath Pichyangkura

Publikováno v: ACS Omega, Vol 5, Iss 43, Pp 28001-28011 (2020)

Externí odkaz: https://doaj.org/article/c8df7313ab6b4f52b062c7a0849188b7

MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data.

Autor: Lee KS; Institute for Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, Zurich, Switzerland. leeka@ethz.ch., Landry Z; Institute for Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, Zurich, Switzerland.; Department of Marine and Environmental Biology, University of Southern California, Los Angeles, CA, USA., Athar A; European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Cambridge, UK., Alcolombri U; Department of Plant and Environmental Sciences, Institute of Life Science, The Hebrew University of Jerusalem, Jerusalem, Israel., Pramoj Na Ayutthaya P; Institute for Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, Zurich, Switzerland., Berry D; Division of Microbial Ecology, Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria.; Joint Microbiome Facility of the Medical University of Vienna and the University of Vienna, Vienna, Austria., de Bettignies P; HORIBA France SAS, Palaiseau, France., Cheng JX; Department of Electrical and Computer Engineering and Department of Biomedical Engineering, Boston University, Boston, MA, USA., Csucs G; Scientific Center for Optical and Electron Microscopy, ETH Zurich, Zurich, Switzerland., Cui L; Key Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China., Deckert V; Institute of Physical Chemistry (IPC) and Abbe Center of Photonics (ACP), Friedrich Schiller University Jena, member of the Leibniz Centre for Photonics in Infection Research (LPI), Jena, Germany.; Leibniz Institute of Photonic Technology e.V. Jena, member of Leibniz Health Technology, member of the Leibniz Centre for Photonics in Infection Research (LPI), Jena, Germany., Dieing T; WITec GmbH, Ulm, Germany., Dionne J; Department of Materials Science and Engineering, and Department of Radiology, Stanford University, Stanford, CA, USA., Doskocil O; Institute of Scientific Instruments of the Czech Academy of Sciences, v.v.i, Brno, Czech Republic., D'Souza G; Department of Environmental Microbiology, Eawag, Dübendorf, Switzerland.; Institute of Biogeochemistry and Pollutant Dynamics, Department of Environmental Systems Science, ETH Zurich, Zurich, Switzerland., García-Timermans C; CMET, Center for Microbial Technology and Ecology, Department of Biotechnology, Ghent University, Gent, Belgium., Gierlinger N; Institute of Biophysics, Department of Bionanosciences, University of Natural Resources and Life Sciences (BOKU), Vienna, Austria., Goda K; Department of Chemistry, The University of Tokyo, Tokyo, Japan.; Institute of Technological Sciences, Wuhan University, Wuhan, China.; Department of Bioengineering, University of California, Los Angeles, CA, USA., Hatzenpichler R; Department of Chemistry and Biochemistry, Department of Microbiology and Cell Biology, Center for Biofilm Engineering, and Thermal Biology Institute, Montana State University, Bozeman, MT, USA., Henshaw RJ; Institute for Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, Zurich, Switzerland., Huang WE; Department of Engineering Science, University of Oxford, Oxford, UK., Iermak I; WITec GmbH, Ulm, Germany., Ivleva NP; Chair of Analytical Chemistry and Water Chemistry, Institute of Water Chemistry, TUM School of Natural Sciences (Dep. Chemistry), Technical University of Munich, Garching, Germany., Kneipp J; Department of Chemistry, Humboldt- Universität zu Berlin, Berlin, Germany., Kubryk P; Renishaw GmbH, Pliezhausen, Germany., Küsel K; Institute of Biodiversity, Aquatic Geomicrobiology, Friedrich Schiller University Jena, Jena, Germany.; Cluster of Excellence Balance of the Microverse, Friedrich Schiller University Jena, Jena, Germany., Lee TK; Department of Environmental and Energy Engineering, Yonsei University, Wonju, Republic of Korea., Lee SS; Scientific Center for Optical and Electron Microscopy, ETH Zurich, Zurich, Switzerland.; Institute of Biochemistry, Department of Biology, ETH Zurich, Zurich, Switzerland., Ma B; Single-Cell Center, CAS Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao Institute of Bioengineering and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, China., Martínez-Pérez C; Institute for Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, Zurich, Switzerland., Matousek P; Central Laser Facility, Research Complex at Harwell, STFC Rutherford Appleton Laboratory, UKRI, Harwell, UK., Meckenstock RU; Environmental Microbiology and Biotechnology (EMB), University of Duisburg-Essen, Essen, Germany., Min W; Department of Chemistry, Columbia University, New York, NY, USA.; Kavli Institute for Brain Science, Columbia University, New York, NY, USA., Mojzeš P; Institute of Physics, Faculty of Mathematics and Physics, Charles University, Prague, Czech Republic., Müller O; Institute for Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, Zurich, Switzerland., Kumar N; Department of Chemistry and Applied Biosciences, ETH Zurich, Zurich, Switzerland., Nielsen PH; Center for Microbial Communities, Department of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark., Notingher I; School of Physics and Astronomy, University of Nottingham, Nottingham, UK., Palatinszky M; Division of Microbial Ecology, Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria., Pereira FC; Division of Microbial Ecology, Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria.; School of Biological Sciences, University of Southampton, Southampton, UK., Pezzotti G; Ceramic Physics Laboratory, Kyoto Institute of Technology, Kyoto, Japan.; Department of Molecular Genetics, Institute of Biomedical Science, Kansai Medical University, Osaka, Japan.; Department of Immunology, Graduate School of Medical Science, Kyoto Prefectural University of Medicine, Kyoto, Japan., Pilat Z; Institute of Scientific Instruments of the Czech Academy of Sciences, v.v.i, Brno, Czech Republic., Plesinger F; Institute of Scientific Instruments of the Czech Academy of Sciences, v.v.i, Brno, Czech Republic., Popp J; Institute of Physical Chemistry (IPC) and Abbe Center of Photonics (ACP), Friedrich Schiller University Jena, member of the Leibniz Centre for Photonics in Infection Research (LPI), Jena, Germany.; Leibniz Institute of Photonic Technology e.V. Jena, member of Leibniz Health Technology, member of the Leibniz Centre for Photonics in Infection Research (LPI), Jena, Germany., Probst AJ; Environmental Metagenomics, Research Center One Health Ruhr of the University Alliance Ruhr, Faculty of Chemistry, University of Duisburg-Essen, Essen, Germany., Riva A; Division of Microbial Ecology, Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria.; School of Life Sciences, Technical University of Munich, Freising-Weihenstephan, Germany., Saleh AAE; Department of Engineering Mathematics and Physics, Faculty of Engineering, Cairo University, Giza, Egypt., Samek O; Institute of Scientific Instruments of the Czech Academy of Sciences, v.v.i, Brno, Czech Republic., Sapers HM; Centre for Research in Earth and Space Sciences, York University, Toronto, Ontario, Canada., Schubert OT; Department of Environmental Microbiology, Eawag, Dübendorf, Switzerland.; Institute of Biogeochemistry and Pollutant Dynamics, Department of Environmental Systems Science, ETH Zurich, Zurich, Switzerland., Stubbusch AKM; Department of Environmental Microbiology, Eawag, Dübendorf, Switzerland.; Institute of Biogeochemistry and Pollutant Dynamics, Department of Environmental Systems Science, ETH Zurich, Zurich, Switzerland.; Geological Institute, Department of Earth Sciences, ETH Zurich, Zurich, Switzerland., Tadesse LF; Department of Mechanical Engineering, MIT, Cambridge, MA, USA.; Ragon Institute of MGH, MIT and Harvard, Cambridge, MA, USA.; Jameel Clinic for AI & Healthcare, MIT, Cambridge, MA, USA., Taylor GT; School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY, USA., Wagner M; Division of Microbial Ecology, Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria.; Center for Microbial Communities, Department of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark., Wang J; Institute for Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, Zurich, Switzerland.; Advanced Analytical Technologies, Empa, Dübendorf, Switzerland., Yin H; Division of Biomedical Engineering, James Watt School of Engineering, University of Glasgow, Glasgow, UK., Yue Y; Institute for Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, Zurich, Switzerland.; Advanced Analytical Technologies, Empa, Dübendorf, Switzerland., Zenobi R; Department of Chemistry and Applied Biosciences, ETH Zurich, Zurich, Switzerland., Zini J; Timegate Instruments Oy, Oulu, Finland.; Drug Research Program, Division of Pharmaceutical Biosciences, Faculty of Pharmacy, University of Helsinki, Helsinki, Finland., Sarkans U; European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Cambridge, UK. ugis@ebi.ac.uk., Stocker R; Institute for Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, Zurich, Switzerland. romanstocker@ethz.ch.

Publikováno v: Nature microbiology [Nat Microbiol] 2024 May; Vol. 9 (5), pp. 1152-1156.

Insight into the substrate specificity change caused by the Y227H mutation of α-glucosidase III from the European honeybee (Apis mellifera) through molecular dynamics simulations.

Autor: Pratchaya Pramoj Na Ayutthaya, Chanpen Chanchao, Surasak Chunsrivirot

Publikováno v: PLoS ONE, Vol 13, Iss 6, p e0198484 (2018)

Honey from the European honeybee, Apis mellifera, is produced by α-glucosidases (HBGases) and is widely used in food, pharmaceutical, and cosmetic industries. Categorized by their substrate specificities, HBGases have three isoforms: HBGase I, II an

Externí odkaz: https://doaj.org/article/c1445f31c92e48e9997697c225eb7a84

Commensal Pseudomonas strains facilitate protective response against pathogens in the host plant.

Autor: Shalev O; Department of Molecular Biology, Max Planck Institute for Biology Tübingen, Tübingen, Germany.; Systems Biology of Microbial Communities, University of Tübingen, Tübingen, Germany., Karasov TL; Department of Molecular Biology, Max Planck Institute for Biology Tübingen, Tübingen, Germany.; School of Biological Sciences, University of Utah, Salt Lake City, UT, USA., Lundberg DS; Department of Molecular Biology, Max Planck Institute for Biology Tübingen, Tübingen, Germany., Ashkenazy H; Department of Molecular Biology, Max Planck Institute for Biology Tübingen, Tübingen, Germany., Pramoj Na Ayutthaya P; Department of Molecular Biology, Max Planck Institute for Biology Tübingen, Tübingen, Germany.; Department of Civil, Environmental and Geomatic Engineering, Swiss Federal Institute of Technology (ETH) Zurich, Zurich, Switzerland., Weigel D; Department of Molecular Biology, Max Planck Institute for Biology Tübingen, Tübingen, Germany. weigel@tue.mpg.de.

Publikováno v: Nature ecology & evolution [Nat Ecol Evol] 2022 Apr; Vol. 6 (4), pp. 383-396. Date of Electronic Publication: 2022 Feb 24.

Increased antibiotic resistance gene abundance linked to intensive bacterial competition in the phyllosphere across an elevational gradient.

Autor: Ding, Yihui¹ (AUTHOR), Ma, Rui‐Ao¹ (AUTHOR), Zhang, Ran¹ (AUTHOR), Zhang, Hongwei¹ (AUTHOR), Zhang, Jian² (AUTHOR) zhangjian@mail.sysu.edu.cn, Li, Shaopeng¹ (AUTHOR), Zhang, Si‐Yu¹ (AUTHOR) syzhang@des.ecnu.edu.cn

Publikováno v: Environmental Microbiology Reports. Dec2024, Vol. 16 Issue 6, p1-14. 14p.