Molecular characterisation of antimicrobial resistance in Pseudomonas aeruginosaand Acinetobacter baumanniiduring 2014 and 2015 collected across India

Autor: Pragasam, AK, Vijayakumar, S, Bakthavatchalam, YD, Kapil, A, Das, BK, Ray, P, Gautam, V, Sistla, S, Parija, SC, Walia, K, Ohri, VC, Anandan, S, Veeraraghavan, B

Publikováno v: Indian Journal of Medical Microbiology; October-December 2016, Vol. 34 Issue: 4 p433-441, 9p

Collinsella aerofaciens linked with increased ethanol production and liver inflammation contribute to the pathophysiology of NAFLD.

Autor: Purohit A; Translational Health Science and Technology Institute, NCR Biotech Science Cluster, Faridabad 121004, India., Kandiyal B; Translational Health Science and Technology Institute, NCR Biotech Science Cluster, Faridabad 121004, India., Kumar S; Translational Health Science and Technology Institute, NCR Biotech Science Cluster, Faridabad 121004, India., Pragasam AK; Translational Health Science and Technology Institute, NCR Biotech Science Cluster, Faridabad 121004, India., Kamboj P; Translational Health Science and Technology Institute, NCR Biotech Science Cluster, Faridabad 121004, India., Talukdar D; Translational Health Science and Technology Institute, NCR Biotech Science Cluster, Faridabad 121004, India., Verma J; Translational Health Science and Technology Institute, NCR Biotech Science Cluster, Faridabad 121004, India., Sharma V; Translational Health Science and Technology Institute, NCR Biotech Science Cluster, Faridabad 121004, India., Sarkar S; Translational Health Science and Technology Institute, NCR Biotech Science Cluster, Faridabad 121004, India., Mahajan D; Translational Health Science and Technology Institute, NCR Biotech Science Cluster, Faridabad 121004, India., Yadav R; Department of Pathology, All India Institute of Medical Sciences, New Delhi 110029, India., Ahmed R; Translational Health Group, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India., Nanda R; Translational Health Group, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India., Dikshit M; Translational Health Science and Technology Institute, NCR Biotech Science Cluster, Faridabad 121004, India., Banerjee SK; Department of Biotechnology, National Institute of Pharmaceutical Education and Research (NIPER-Guwahati), Changsari, Guwahati, Assam 781101, India., Shalimar; Department of Gastroenterology and Human Nutrition, All India Institute of Medical Sciences, New Delhi 110029, India., Das B; Translational Health Science and Technology Institute, NCR Biotech Science Cluster, Faridabad 121004, India.

Publikováno v: IScience [iScience] 2023 Dec 26; Vol. 27 (2), pp. 108764. Date of Electronic Publication: 2023 Dec 26 (Print Publication: 2024).

Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes.

Autor: Carey ME; Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, United Kingdom.; Department of Infection Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, United Kingdom.; IAVI, Chelsea & Westminster Hospital, London, United Kingdom., Dyson ZA; Department of Infection Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, United Kingdom.; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Australia.; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom., Ingle DJ; Department of Microbiology and Immunology at the Peter Doherty Institute for Infection and Immunity, The University of Melbourne, Melbourne, Australia., Amir A; National Institute of Health, Islamabad, Pakistan., Aworh MK; Nigeria Field Epidemiology and Laboratory Training Programme, Abuja, Nigeria.; College of Veterinary Medicine, North Carolina State University, Raleigh, United States., Chattaway MA; United Kingdom Health Security Agency, London, United Kingdom., Chew KL; National University Hospital, Singapore, Singapore., Crump JA; Centre for International Health, University of Otago, Dunedin, New Zealand., Feasey NA; Department of Clinical Sciences, Liverpool School of Tropical Medicine, Liverpool, United Kingdom.; Malawi-Liverpool Wellcome Programme, Kamuzu University of Health Sciences, Blantyre, Malawi., Howden BP; Centre for Pathogen Genomics, Department of Microbiology and Immunology, University of Melbourne at Doherty Institute for Infection and Immunity, Melbourne, Australia.; Microbiological Diagnostic Unit Public Health Laboratory, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, Australia., Keddy KH; Independent consultant, Johannesburg, South Africa., Maes M; Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, United Kingdom., Parry CM; Department of Clinical Sciences, Liverpool School of Tropical Medicine, Liverpool, United Kingdom., Van Puyvelde S; Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, United Kingdom.; University of Antwerp, Antwerp, Belgium., Webb HE; Centers for Disease Control and Prevention, Atlanta, United States., Afolayan AO; Global Health Research Unit (GHRU) for the Genomic Surveillance of Antimicrobial Resistance, Faculty of Pharmacy, University of Ibadan, Ibadan, Nigeria., Alexander AP; Lady Willingdon Hospital, Manali, India., Anandan S; Department of Clinical Microbiology, Christian Medical College, Vellore, India., Andrews JR; Division of Infectious Diseases and Geographic Medicine, Stanford University, Stanford, United States., Ashton PM; Malawi-Liverpool Wellcome Programme, Blantyre, Malawi.; Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, United Kingdom., Basnyat B; Oxford University Clinical Research Unit Nepal, Kathmandu, Nepal., Bavdekar A; KEM Hospital Research Centre, Pune, India., Bogoch II; Department of Medicine, Division of Infectious Diseases, University of Toronto, Toronto, Canada., Clemens JD; International Vaccine Institute, Seoul, Republic of Korea.; International Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.; UCLA Fielding School of Public Health, Los Angeles, United States.; Korea University, Seoul, Republic of Korea., da Silva KE; Division of Infectious Diseases and Geographic Medicine, Stanford University, Stanford, United States., De A; Topiwala National Medical College, Mumbai, India., de Ligt J; ESR, Institute of Environmental Science and Research Ltd., Porirua, Wellington, New Zealand., Diaz Guevara PL; Grupo de Microbiologia, Instituto Nacional de Salud, Bogota, Colombia., Dolecek C; Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.; Mahidol Oxford Tropical Medicine Research Unit, Mahidol University, Bangkok, Thailand., Dutta S; ICMR - National Institute of Cholera & Enteric Diseases, Kolkata, India., Ehlers MM; Department of Medical Microbiology, Faculty of Health Sciences, University of Pretoria, Pretoria, South Africa.; Department of Medical Microbiology, Tshwane Academic Division, National Health Laboratory Service, Pretoria, South Africa., Francois Watkins L; Centers for Disease Control and Prevention, Atlanta, United States., Garrett DO; Sabin Vaccine Institute, Washington DC, United States., Godbole G; United Kingdom Health Security Agency, London, United Kingdom., Gordon MA; Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, United Kingdom., Greenhill AR; Federation University Australia, Churchill, Australia.; Papua New Guinea Institute of Medical Research, Goroka, Papua New Guinea., Griffin C; Centers for Disease Control and Prevention, Atlanta, United States., Gupta M; Post Graduate Institute of Medical Education and Research, Chandigarh, India., Hendriksen RS; Technical University of Denmark, Copenhagen, Denmark., Heyderman RS; Research Department of Infection, Division of Infection and Immunity, University College London, London, United Kingdom., Hooda Y; Child Health Research Foundation, Dhaka, Bangladesh., Hormazabal JC; Bacteriologia, Subdepartamento de Enfermedades Infecciosas, Departamento de Laboratorio Biomedico, Instituto de Salud Publica de Chile (ISP), Santiago, Chile., Ikhimiukor OO; Global Health Research Unit (GHRU) for the Genomic Surveillance of Antimicrobial Resistance, Faculty of Pharmacy, University of Ibadan, Ibadan, Nigeria., Iqbal J; Department of Pediatrics and Child Health, Aga Khan University, Karachi, Pakistan., Jacob JJ; Department of Clinical Microbiology, Christian Medical College, Vellore, India., Jenkins C; United Kingdom Health Security Agency, London, United Kingdom., Jinka DR; Rural Development Trust Hospital, Anantapur, India., John J; Department of Community Health, Christian Medical College, Vellore, India., Kang G; Department of Community Health, Christian Medical College, Vellore, India., Kanteh A; Medical Research Council Unit The Gambia at London School Hygiene & Tropical Medicine, Fajara, Gambia., Kapil A; All India Institute of Medical Sciences, Delhi, India., Karkey A; Oxford University Clinical Research Unit Nepal, Kathmandu, Nepal., Kariuki S; Centre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya., Kingsley RA; Quadram Institute Bioscience, Norwich, United Kingdom., Koshy RM; Makunda Christian Hospital, Assam, India., Lauer AC; Centers for Disease Control and Prevention, Atlanta, United States., Levine MM; Center for Vaccine Development and Global Health (CVD), University of Maryland School of Medicine, Baltimore, Maryland, USA, Baltimore, United States., Lingegowda RK; Central Research Laboratory, Kempegowda Institute of Medical Sciences, Bengaluru, India., Luby SP; Division of Infectious Diseases and Geographic Medicine, Stanford University, Stanford, United States., Mackenzie GA; Medical Research Council Unit The Gambia at London School Hygiene & Tropical Medicine, Fajara, Gambia., Mashe T; National Microbiology Reference Laboratory, Harare, Zimbabwe.; World Health Organization, Harare, Zimbabwe., Msefula C; Kamuzu University of Health Sciences, Blantyre, Malawi., Mutreja A; Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, United Kingdom., Nagaraj G; Central Research Laboratory, Kempegowda Institute of Medical Sciences, Bengaluru, India., Nagaraj S; Saint Johns Medical College and Hospital, Bengaluru, India., Nair S; United Kingdom Health Security Agency, London, United Kingdom., Naseri TK; Ministry of Health, Government of Samoa, Apia, Samoa., Nimarota-Brown S; Ministry of Health, Government of Samoa, Apia, Samoa., Njamkepo E; Institut Pasteur, Université Paris Cité, Paris, France., Okeke IN; Global Health Research Unit (GHRU) for the Genomic Surveillance of Antimicrobial Resistance, Faculty of Pharmacy, University of Ibadan, Ibadan, Nigeria., Perumal SPB; Kanchi Kamakoti CHILDS Trust Hospital, Chennai, India., Pollard AJ; Oxford Vaccine Group, Department of Paediatrics, University of Oxford, Oxford, United Kingdom.; The NIHR Oxford Biomedical Research Centre, Oxford, United Kingdom., Pragasam AK; Department of Clinical Microbiology, Christian Medical College, Vellore, India., Qadri F; International Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh., Qamar FN; Department of Pediatrics and Child Health, Aga Khan University, Karachi, Pakistan., Rahman SIA; International Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh., Rambocus SD; Microbiological Diagnostic Unit Public Health Laboratory, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, Australia., Rasko DA; Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, United States.; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, United States., Ray P; Post Graduate Institute of Medical Education and Research, Chandigarh, India., Robins-Browne R; Department of Microbiology and Immunology at the Peter Doherty Institute for Infection and Immunity, The University of Melbourne, Melbourne, Australia.; Murdoch Children's Research Institute, Royal Children's Hospital, Parkville, Australia., Rongsen-Chandola T; Centre for Health Research and Development, Society for Applied Studies, Delhi, India., Rutanga JP; University of Rwanda, College of Science and Technology, Kigali, Rwanda., Saha SK; Child Health Research Foundation, Dhaka, Bangladesh., Saha S; Child Health Research Foundation, Dhaka, Bangladesh., Saigal K; Chacha Nehru Bal Chikitsalaya, Delhi, India., Sajib MSI; Child Health Research Foundation, Dhaka, Bangladesh.; Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, United Kingdom., Seidman JC; Sabin Vaccine Institute, Washington DC, United States., Shakya J; Dhulikhel Hospital, Dhulikhel, Nepal.; Institute for Research in Science and Technology, Kathmandu, Nepal., Shamanna V; Central Research Laboratory, Kempegowda Institute of Medical Sciences, Bengaluru, India., Shastri J; Topiwala National Medical College, Mumbai, India.; Kasturba Hospital for Infectious Diseases, Mumbai, India., Shrestha R; Center for Infectious Disease Research & Surveillance, Dhulikhel Hospital, Kathmandu University Hospital, Dhulikhel, Nepal., Sia S; Research Institute for Tropical Medicine, Department of Health, Muntinlupa City, Philippines., Sikorski MJ; Center for Vaccine Development and Global Health (CVD), University of Maryland School of Medicine, Baltimore, Maryland, USA, Baltimore, United States.; Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, United States.; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, United States., Singh A; Chinchpada Christian Hospital, Navapur, India., Smith AM; Centre for Enteric Diseases, National Institute for Communicable Diseases, Johannesburg, South Africa., Tagg KA; Centers for Disease Control and Prevention, Atlanta, United States., Tamrakar D; Center for Infectious Disease Research & Surveillance, Dhulikhel Hospital, Kathmandu University Hospital, Dhulikhel, Nepal., Tanmoy AM; Child Health Research Foundation, Dhaka, Bangladesh., Thomas M; Christian Medical College, Ludhiana, Ludhiana, India., Thomas MS; Duncan Hospital, Raxaul, India., Thomsen R; Ministry of Health, Government of Samoa, Apia, Samoa., Thomson NR; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom., Tupua S; Ministry of Health, Government of Samoa, Apia, Samoa., Vaidya K; University of California Davis, Davis, United States., Valcanis M; Microbiological Diagnostic Unit Public Health Laboratory, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, Australia., Veeraraghavan B; Department of Clinical Microbiology, Christian Medical College, Vellore, India., Weill FX; Institut Pasteur, Université Paris Cité, Paris, France., Wright J; ESR, Institute of Environmental Science and Research Ltd., Porirua, Wellington, New Zealand., Dougan G; Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, United Kingdom., Argimón S; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, United Kingdom., Keane JA; Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, United Kingdom., Aanensen DM; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, United Kingdom., Baker S; Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, United Kingdom.; IAVI, Chelsea & Westminster Hospital, London, United Kingdom., Holt KE; Department of Infection Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, United Kingdom.; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Australia.

Publikováno v: ELife [Elife] 2023 Sep 12; Vol. 12. Date of Electronic Publication: 2023 Sep 12.

Genomic analysis unveils genome degradation events and gene flux in the emergence and persistence of S. Paratyphi A lineages.

Autor: Jacob JJ; Christian Medical College, Vellore, India., Pragasam AK; Christian Medical College, Vellore, India., Vasudevan K; Christian Medical College, Vellore, India.; REVA University, Bangalore, India., Velmurugan A; Christian Medical College, Vellore, India., Priya Teekaraman M; Christian Medical College, Vellore, India., Priya Thirumoorthy T; Christian Medical College, Vellore, India., Ray P; Post Graduate Institute of Medical & Educational Research, Chandigarh, India., Gupta M; Post Graduate Institute of Medical & Educational Research, Chandigarh, India., Kapil A; All India Institute of Medical Sciences, New Delhi, India., Bai SP; Kanchi Kamakoti Childs Trust Hospital, Chennai, India., Nagaraj S; St. John's Medical College, Bengaluru, India., Saigal K; Chacha Nehru Bal Chikitsalaya, Delhi, India., Chandola TR; Centre for Health Research & Development-Society for Applied Studies, New Delhi, India., Thomas M; Christian Medical College, Ludhiana, India., Bavdekar A; KEM Hospital & Research Centre, Pune, India., Ebenezer SE; The Duncan Hospital, Raxaul, India., Shastri J; Topiwala National Medical College & BYL Nair Charitable Hospital, Mumbai, India., De A; Topiwala National Medical College & BYL Nair Charitable Hospital, Mumbai, India., Dutta S; ICMR-National Institute of Cholera and Enteric Diseases, Kolkata, India., Alexander AP; Lady Willingdon Hospital, Manali, India., Koshy RM; Makunda Christian Leprosy & General Hospital, Karimjang, India., Jinka DR; Rural Development Trust Hospital, Bathalapalli, Andhra Pradesh, India., Singh A; Chinchpada Christian Hospital, Nandurbar, India., Srivastava SK; Department of Microbiology, SSN College, University of Delhi, Delhi, India., Anandan S; Christian Medical College, Vellore, India., Dougan G; Cambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID), Department of Medicine, University of Cambridge, Cambridge, United Kingdom., John J; Christian Medical College, Vellore, India., Kang G; Christian Medical College, Vellore, India., Veeraraghavan B; Christian Medical College, Vellore, India., Mutreja A; Cambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID), Department of Medicine, University of Cambridge, Cambridge, United Kingdom.

Publikováno v: PLoS pathogens [PLoS Pathog] 2023 Apr 28; Vol. 19 (4), pp. e1010650. Date of Electronic Publication: 2023 Apr 28 (Print Publication: 2023).

The international and intercontinental spread and expansion of antimicrobial-resistant Salmonella Typhi: a genomic epidemiology study.

Autor: da Silva KE; Division of Infectious Diseases and Geographic Medicine, Stanford University, Stanford, CA, USA., Tanmoy AM; Child Health Research Foundation, Dhaka, Bangladesh; Department of Medical Microbiology and Infectious Diseases, Erasmus University Medical Center, Rotterdam, Netherlands., Pragasam AK; Department of Clinical Microbiology, Christian Medical College, Vellore, India., Iqbal J; Department of Pediatrics and Child Health, Aga Khan University, Karachi, Pakistan., Sajib MSI; Child Health Research Foundation, Dhaka, Bangladesh; Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, UK., Mutreja A; Cambridge Institute of Therapeutic Immunology & Infectious Disease, Department of Medicine, University of Cambridge, Cambridge, UK., Veeraraghavan B; Department of Clinical Microbiology, Christian Medical College, Vellore, India., Tamrakar D; Department of Community Medicine, Dhulikhel Hospital, Kathmandu University Hospital, Kathmandu, Nepal., Qamar FN; Department of Pediatrics and Child Health, Aga Khan University, Karachi, Pakistan., Dougan G; Department of Medicine, Cambridge Biomedical Campus, Cambridge, UK; University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, UK., Bogoch I; Department of Medicine, University of Toronto, Toronto, ON, Canada., Seidman JC; Applied Epidemiology, Sabin Vaccine Institute, Washington, DC, USA., Shakya J; Research and Development Division, Dhulikhel Hospital, Kathmandu University Hospital, Kathmandu, Nepal; Central Department of Microbiology, Tribhuvan University, Kirtipur, Nepal., Vaidya K; Research and Development Division, Dhulikhel Hospital, Kathmandu University Hospital, Kathmandu, Nepal., Carey ME; Department of Medicine, Cambridge Biomedical Campus, Cambridge, UK., Shrestha R; Department of Pharmacology, Dhulikhel Hospital, Kathmandu University Hospital, Kathmandu, Nepal., Irfan S; Department of Pathology and Microbiology, Aga Khan University, Karachi, Pakistan., Baker S; Department of Medicine, Cambridge Biomedical Campus, Cambridge, UK; University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, UK., Luby SP; Division of Infectious Diseases and Geographic Medicine, Stanford University, Stanford, CA, USA., Cao Y; Department of Geography, The University of Hong Kong, Hong Kong Special Administrative Region, China., Dyson ZA; Department of Medicine, Cambridge Biomedical Campus, Cambridge, UK; Department of Infection Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, UK; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, VIC, Australia; Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK., Garrett DO; Applied Epidemiology, Sabin Vaccine Institute, Washington, DC, USA., John J; Department of Community Health, Christian Medical College, Vellore, India., Kang G; The Wellcome Trust Research Laboratory, Division of Gastrointestinal Sciences, Christian Medical College, Vellore, India., Hooda Y; Child Health Research Foundation, Dhaka, Bangladesh; MRC Laboratory Molecular Biology, Cambridge, UK., Saha SK; Child Health Research Foundation, Dhaka, Bangladesh; Department of Microbiology, Dhaka Shishu Hospital, Dhaka, Bangladesh., Saha S; Child Health Research Foundation, Dhaka, Bangladesh., Andrews JR; Division of Infectious Diseases and Geographic Medicine, Stanford University, Stanford, CA, USA. Electronic address: jandr@stanford.edu.

Publikováno v: The Lancet. Microbe [Lancet Microbe] 2022 Aug; Vol. 3 (8), pp. e567-e577. Date of Electronic Publication: 2022 Jun 21.