MetaboListem and TABoLiSTM: two deep learning Algorithms for metabolite named entity recognition

Autor: Yeung, C, Beck, T, Posma, JM

Reviewing the metabolomics literature is becoming increasingly difficult because of the rapid expansion of relevant journal literature. Text-mining technologies are therefore needed to facilitate more efficient literature review. Here we contribute a

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______1032::c31c1e2129ed64dde4957d1b2e4d9198
http://hdl.handle.net/10044/1/97435

Dietary metabotype modelling predicts individual responses to dietary interventions

Autor: Garcia Perez, I, Posma, JM, Chambers, E, Mathers, J, Draper, J, Beckmann, M, Nicholson, J, Holmes, E, Frost, G

Habitual consumption of poor quality diets is linked directly to risk factors for many non-communicable disease. This has resulted in the vast majority of countries globally and the World Health Organisation developing policies for healthy eating to

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______1032::83ef8e40b39ca3d70e34913b2bddd451
http://hdl.handle.net/10044/1/80100

Modernizing dietary assessment

Autor: Garcia Perez, I, Posma, JM, Gibson, R, Chambers, ES, Nicholson, JK, Holmes, E, Frost, G

Publikováno v: IUNS 21st ICN International Congress of Nutrition

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______1032::5c266cd0a2166631f45ba2905dca1e33
http://hdl.handle.net/10044/1/64043

The Association of Cardiometabolic, Diet and Lifestyle Parameters With Plasma Glucagon-like Peptide-1: An IMI DIRECT Study.

Autor: Eriksen R; Section for Nutrition Research, Division of Digestive Diseases, Department of Metabolism, Digestion and Reproduction, Faculty of Medicine, Imperial College London, London SW7 2AZ, UK., White MC; Population Health & Genomics, School of Medicine, University of Dundee, Dundee DD1 9SY, UK., Dawed AY; Population Health & Genomics, School of Medicine, University of Dundee, Dundee DD1 9SY, UK., Perez IG; Section for Nutrition Research, Division of Digestive Diseases, Department of Metabolism, Digestion and Reproduction, Faculty of Medicine, Imperial College London, London SW7 2AZ, UK., Posma JM; Section of Bioinformatics, Division of Systems Medicine, Department of Metabolism, Digestion and Reproduction, Imperial College London, London SW7 2AZ, UK.; Health Data Research UK, London NW1 2BE, UK., Haid M; Research Unit Molecular Endocrinology and Metabolism, Helmholtz Zentrum Muenchen, German Research Center for Environmental Health (GmbH), D-85764 Neuherberg, Germany., Sharma S; German Center for Diabetes Research, 85764 Neuherberg, Germany.; Institute of Epidemiology, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, 85764 Bavaria, Germany., Prehn C; Research Unit Molecular Endocrinology and Metabolism, Helmholtz Zentrum Muenchen, German Research Center for Environmental Health (GmbH), D-85764 Neuherberg, Germany., Thomas EL; Research Centre for Optimal Health, School of Life Sciences, University of Westminster, London W1W 6UW, UK., Koivula RW; Genetic and Molecular Epidemiology Unit, Department of Clinical Sciences, Lund University Diabetes Centre, Lund University, Skåne University Hospital, 221 00 Malmö, Sweden.; Oxford Centre for Diabetes, Endocrinology and Metabolism, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 7LE, UK., Bizzotto R; Institute of Neuroscience-National Research Council, 35127 Padua, Italy., Mari A; Institute of Neuroscience-National Research Council, 35127 Padua, Italy., Giordano GN; Genetic and Molecular Epidemiology Unit, Department of Clinical Sciences, Lund University Diabetes Centre, Lund University, Skåne University Hospital, 221 00 Malmö, Sweden., Pavo I; Eli Lilly Regional Operations GmbH, 1030 Vienna, Austria., Schwenk JM; Science for Life Laboratory, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH-Royal Institute of Technology, SE-100 44 Stockholm, Sweden., De Masi F; Department of Health Technology, Kgs Lyngby and The Novo Nordisk Foundation Center for Protein Research, Technical University of Denmark, University of Copenhagen, 2200 Copenhagen, Denmark., Tsirigos KD; Department of Health Technology, Kgs Lyngby and The Novo Nordisk Foundation Center for Protein Research, Technical University of Denmark, University of Copenhagen, 2200 Copenhagen, Denmark., Brunak S; Department of Health Technology, Kgs Lyngby and The Novo Nordisk Foundation Center for Protein Research, Technical University of Denmark, University of Copenhagen, 2200 Copenhagen, Denmark.; Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, DK-2200 Copenhagen, Denmark., Viñuela A; Biosciences Institute, Newcastle University, Newcastle upon Tyne NE2 4HH, UK., Mahajan A; Wellcome Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK., McDonald TJ; NIHR Exeter Clinical Research Facility, Royal Devon & Exeter Hospital, Exeter EX2 5DW, UK., Kokkola T; Department of Medicine, University of Eastern Finland and Kuopio University Hospital, FI-70211 Kuopio, Finland., Rutters F; Department of Epidemiology and data Science, Amsterdam Public Health Institute, Amsterdam UMC, location VUMC, 1007 Amsterdam, the Netherlands., Beulens J; Department of Epidemiology and data Science, Amsterdam Public Health Institute, Amsterdam UMC, location VUMC, 1007 Amsterdam, the Netherlands., Muilwijk M; Department of Epidemiology and data Science, Amsterdam Public Health Institute, Amsterdam UMC, location VUMC, 1007 Amsterdam, the Netherlands., Blom M; Department of Epidemiology and data Science, Amsterdam Public Health Institute, Amsterdam UMC, location VUMC, 1007 Amsterdam, the Netherlands., Elders P; Department of Epidemiology and data Science, Amsterdam Public Health Institute, Amsterdam UMC, location VUMC, 1007 Amsterdam, the Netherlands., Hansen TH; The Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Science, University of Copenhagen, 2200 Copenhagen, Denmark., Fernandez-Tajes J; Wellcome Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK., Jones A; NIHR Exeter Clinical Research Facility, Royal Devon & Exeter Hospital, Exeter EX2 5DW, UK., Jennison C; Department of Mathematical Sciences, University of Bath, Bath BA2 7AY, UK., Walker M; Institute of Cellular Medicine (Diabetes), Newcastle University, Newcastle upon Tyne NE3 1DQ, UK., McCarthy MI; Oxford Centre for Diabetes, Endocrinology and Metabolism, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 7LE, UK.; Wellcome Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.; NIHR Oxford Biomedical Research Centre, Churchill Hospital, Oxford OX3 7LH, UK., Pedersen O; The Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Science, University of Copenhagen, 2200 Copenhagen, Denmark., Ruetten H; Sanofi-Aventis Deutschland GmbH, R&D, 65926 Frankfurt am Main, Germany., Forgie I; Population Health & Genomics, School of Medicine, University of Dundee, Dundee DD1 9SY, UK., Holst JJ; The Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Science, University of Copenhagen, 2200 Copenhagen, Denmark.; Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark., Thomsen HS; Faculty of Medical and Health Sciences, University of Copenhagen, 2200 Copenhagen, Denmark., Ridderstråle M; Novo Nordisk Fonden Tuborg Havnevej 19, 2900 Hellerup, Denmark., Bell JD; Research Centre for Optimal Health, School of Life Sciences, University of Westminster, London W1W 6UW, UK., Adamski J; Research Unit Molecular Endocrinology and Metabolism, Helmholtz Zentrum Muenchen, German Research Center for Environmental Health (GmbH), D-85764 Neuherberg, Germany.; Lehrstuhl für Experimentelle Genetik, Technische Universität München, 85350 Freising-Weihenstephan, Germany.; Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 117597, Singapore., Franks PW; Genetic and Molecular Epidemiology Unit, Department of Clinical Sciences, Lund University Diabetes Centre, Lund University, Skåne University Hospital, 221 00 Malmö, Sweden.; Department of Nutrition, Harvard School of Public Health, Boston, MA 02115, USA., Hansen T; The Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Science, University of Copenhagen, 2200 Copenhagen, Denmark., Holmes E; Section for Nutrition Research, Division of Digestive Diseases, Department of Metabolism, Digestion and Reproduction, Faculty of Medicine, Imperial College London, London SW7 2AZ, UK., Frost G; Section for Nutrition Research, Division of Digestive Diseases, Department of Metabolism, Digestion and Reproduction, Faculty of Medicine, Imperial College London, London SW7 2AZ, UK., Pearson ER; Population Health & Genomics, School of Medicine, University of Dundee, Dundee DD1 9SY, UK.

Publikováno v: The Journal of clinical endocrinology and metabolism [J Clin Endocrinol Metab] 2024 Aug 13; Vol. 109 (9), pp. e1697-e1707.

LAVASET: Latent Variable Stochastic Ensemble of Trees. An ensemble method for correlated datasets with spatial, spectral, and temporal dependencies.

Autor: Kasapi M; Section of Bioinformatics, Division of Systems Medicine, Department of Metabolism, Digestion, and Reproduction, Faculty of Medicine, Imperial College London, London W12 0NN, United Kingdom.; Faculty of Medicine, National Heart & Lung Institute, Imperial College London, London W12 0NN, United Kingdom.; MRC London Institute of Medical Sciences, Imperial College London, London W12 0HS, United Kingdom., Xu K; Section of Bioinformatics, Division of Systems Medicine, Department of Metabolism, Digestion, and Reproduction, Faculty of Medicine, Imperial College London, London W12 0NN, United Kingdom., Ebbels TMD; Section of Bioinformatics, Division of Systems Medicine, Department of Metabolism, Digestion, and Reproduction, Faculty of Medicine, Imperial College London, London W12 0NN, United Kingdom., O'Regan DP; Faculty of Medicine, National Heart & Lung Institute, Imperial College London, London W12 0NN, United Kingdom.; MRC London Institute of Medical Sciences, Imperial College London, London W12 0HS, United Kingdom., Ware JS; Faculty of Medicine, National Heart & Lung Institute, Imperial College London, London W12 0NN, United Kingdom.; MRC London Institute of Medical Sciences, Imperial College London, London W12 0HS, United Kingdom.; Royal Brompton & Harefield Hospitals, Guy's and St. Thomas' NHS Foundation Trust, London SW3 6NP, United Kingdom.; Program in Medical & Population Genetics, Broad Institute of MIT & Harvard, Cambridge, MA 02142, United States., Posma JM; Section of Bioinformatics, Division of Systems Medicine, Department of Metabolism, Digestion, and Reproduction, Faculty of Medicine, Imperial College London, London W12 0NN, United Kingdom.

Publikováno v: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Mar 04; Vol. 40 (3).