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Detection of single nucleotide polymorphisms in virus genomes assembled from high-throughput sequencing data: large-scale performance testing of sequence analysis strategies.

Autor: Rollin J; Laboratory of Plant Pathology-TERRA-Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium., Bester R; Citrus Research International, Matieland, South Africa.; Department of Genetics, Stellenbosch University, Matieland, South Africa., Brostaux Y; Laboratory of Statistics, Computer Science and Modelling Applied to Bioengineering, TERRA, Gembloux Agro-Bio Tech, Teaching and Research Centre, University of Liège, Gembloux, Belgium., Caglayan K; Plant Protection Department, Agricultural Faculty, Hatay Mustafa Kemal University, Hatay, Turkey., De Jonghe K; Fisheries and Food (ILVO), Plant Sciences Unit, Flanders Research Institute for Agriculture, Merelbeke, Belgium., Eichmeier A; Mendeleum-Institute of Genetics, Faculty of Horticulture, Mendel University in Brno, Lednice, Czech Republic., Foucart Y; Fisheries and Food (ILVO), Plant Sciences Unit, Flanders Research Institute for Agriculture, Merelbeke, Belgium., Haegeman A; Fisheries and Food (ILVO), Plant Sciences Unit, Flanders Research Institute for Agriculture, Merelbeke, Belgium., Koloniuk I; Biology Centre CAS, Ceske Budejovice, Czech Republic., Kominek P; Crop Research Institute, Praha, Czech Republic., Maree H; Citrus Research International, Matieland, South Africa.; Department of Genetics, Stellenbosch University, Matieland, South Africa., Onder S; Department of Plant Protection, Faculty of Agriculture, Eskişehir Osmangazi University, Eskişehir, Turkey., Posada Céspedes S; Department of Biosystems Science and Engineering, ETH Zurich, Basel, 4058, Switzerland.; Swiss Institute of Bioinformatics (SIB), Basel, Switzerland., Roumi V; Plant Protection Department, Faculty of Agriculture, University of Maragheh, Maragheh, Iran., Šafářová D; Department of Cell Biology and Genetics, Faculty of Science, Palacký University Olomouc, Olomouc, Czech Republic., Schumpp O; Plant Protection Department, Agroscope, Nyon, Switzerland., Ulubas Serce C; Plant Production and Technologies Department, Ayhan Şahenk Faculty of Agricultural Science and Technologies, Niğde Ömer Halisdemir University, Niğde, Turkey., Sõmera M; Department of Chemistry and Biotechnology, Tallinn University of Technology, Tallinn, Estonia., Tamisier L; Pathologie Végétale, Institut National de la Recherche pour l'Agriculture, l'Alimentation et l'Environnement (INRAE), Montfavet, France.; GAFL, Institut National de la Recherche pour l'Agriculture, l'Alimentation et l'Environnement (INRAE), Montfavet, France., Vainio E; Natural Resources Institute Finland, Helsinki, Finland., van der Vlugt RA; Wageningen University & Research, Wageningen, The Netherlands., Massart S; Laboratory of Plant Pathology-TERRA-Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium.

Publikováno v: PeerJ [PeerJ] 2023 Aug 16; Vol. 11, pp. e15816. Date of Electronic Publication: 2023 Aug 16 (Print Publication: 2023).